Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_01750	PS417_01755	PS417_01760	PS417_01765	PS417_01770
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-5.4	-1.3	-5.9	N.D.	-0.1
carbon source	L-Histidine (C)	-4.0	-1.0	-3.5	N.D.	-0.3
carbon source	L-Histidine (C)	-4.0	-0.2	-3.1	N.D.	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.2	-0.4	-0.8	N.D.	-0.2
carbon source	L-Valine (C)	-1.5	-0.2	-0.7	N.D.	+0.1
soil	soil sample 2; outgrowth in LB	-2.4	-0.2	+0.3	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.3	-0.3	-0.2	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.0	-0.4	+0.2	N.D.	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.7	+0.2	-0.3	N.D.	-0.6
stress	Doxycycline hyclate 0.001 mg/ml	-0.5	-0.2	-0.8	N.D.	+0.4
soil	soil sample 5; outgrowth in LB	-1.4	+0.3	+0.2	N.D.	+0.1
seeds	Growth on radish seeds for 72 hours	-1.1	+0.2	+0.3	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.5	-0.8	N.D.	+0.0
phage moi 100	Time6-phageFRS	-1.0	-0.1	-0.2	N.D.	+0.6
phage	JP1 MOI 10	-1.1	+0.1	+0.8	N.D.	-0.3
motility	inner cut, LB soft agar motility assay	+0.8	+0.1	-0.8	N.D.	+0.1
carbon source	Carbon source L-Citrulline 5 mM	+1.0	-0.1	-0.6	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	+0.0	+0.2	N.D.	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+0.4	-0.4	N.D.	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	+0.4	+0.3	N.D.	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.7	+0.2	-0.4	N.D.	+0.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	+1.0	+0.1	+0.4	N.D.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+0.4	+1.0	N.D.	+0.4
stress	Cobalt chloride 0.16 mM	+1.2	-0.3	+0.1	N.D.	+0.2
carbon source	Carbon source D-Mannitol 2.5 mM	+1.1	+0.1	+0.8	N.D.	-0.2
motility	outer cut, LB soft agar motility assay	+1.2	+0.2	+0.1	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.6	+0.2	+0.5	N.D.	+0.7
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	+0.5	+0.2	+0.7	N.D.	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.1	+1.7	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.2	+0.6	N.D.	+0.4