Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_01745	PS417_01750	PS417_01755	PS417_01760	PS417_01765
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	-5.4	-1.3	-5.9	N.D.
carbon source	L-Histidine (C)	-0.3	-4.0	-1.0	-3.5	N.D.
carbon source	L-Histidine (C)	-0.4	-4.0	-0.2	-3.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-2.2	-0.4	-0.8	N.D.
carbon source	L-Valine (C)	-0.2	-1.5	-0.2	-0.7	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	-1.3	-0.3	-0.2	N.D.
soil	soil sample 2; outgrowth in LB	+0.8	-2.4	-0.2	+0.3	N.D.
stress	Doxycycline hyclate 0.001 mg/ml	+0.3	-0.5	-0.2	-0.8	N.D.
soil	soil sample 5; outgrowth in LB	-0.1	-1.4	+0.3	+0.2	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.6	+0.4	+0.1	-0.9	N.D.
phage	JP1 MOI 10	-0.4	-1.1	+0.1	+0.8	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-1.0	-0.2	+0.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.5	+0.5	-0.8	N.D.
motility	inner cut, LB soft agar motility assay	-0.3	+0.8	+0.1	-0.8	N.D.
soil	soil sample 3; outgrowth in LB	-0.4	-0.6	+0.1	+0.6	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.7	-0.2	+0.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.9	+0.4	-0.4	N.D.
carbon source	Carbon source L-Citrulline 5 mM	+0.1	+1.0	-0.1	-0.6	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.0	+0.1	+1.1	N.D.
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.6	+1.0	+0.1	+0.4	N.D.
motility	outer cut, LB soft agar motility assay	-0.3	+1.2	+0.2	+0.1	N.D.
stress	Cobalt chloride 0.16 mM	+0.2	+1.2	-0.3	+0.1	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+1.1	+0.1	-0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	-0.6	+0.4	+1.0	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+1.1	-0.0	+0.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.8	+0.2	+0.6	N.D.
phage	P. simiae OR1 MOI 0.1	+0.3	+0.1	+0.2	+1.2	N.D.
carbon source	Carbon source D-Mannitol 2.5 mM	+0.1	+1.1	+0.1	+0.8	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+1.0	+0.4	+0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	-0.1	+0.1	+1.7	N.D.