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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3430 and GFF3431 are separated by 186 nucleotides
GFF3431 and GFF3432 are separated by 121 nucleotides
GFF3432 and GFF3433 are separated by 13 nucleotides
GFF3433 and GFF3434 are separated by 188 nucleotides
GFF3430 - Transcriptional regulator, LysR family, at 253,241 to 254,143
GFF3430
GFF3431 - Glutaryl-CoA dehydrogenase (EC 1.3.8.6), at 254,330 to 255,529
GFF3431
GFF3432 - L-carnitine dehydratase/bile acid-inducible protein F, at 255,651 to 256,889
GFF3432
GFF3433 - hypothetical protein, at 256,903 to 257,334
GFF3433
GFF3434 - Organic hydroperoxide resistance protein, at 257,523 to 257,936
GFF3434
Group
Condition
GFF3430
GFF3431
GFF3432
GFF3433
GFF3434
complex community
Community=arabino-guar; Passage=4
-0.4
-0.7
-0.8
-0.3
-0.7
complex community
Community=Locust bean gum; Passage=4
-0.3
-0.7
-0.0
-1.3
+0.2
complex community
Community=Locust bean gum; Passage=4
-0.4
-1.0
-0.1
-0.6
+0.1
complex community
Community=arabino-guar; Passage=4
-0.3
-0.7
-0.1
+0.3
-1.3
complex community
Community=Kojac gum; Passage=4
+0.1
-1.1
-0.4
-0.5
+0.6
complex community
Community=arabino-guar; Passage=4
-0.4
-0.5
+0.1
-0.3
+0.1
complex community
Community=guar; Passage=4
-0.7
-0.9
+0.4
-0.0
+0.3
vitamin
M9 with Supernatant from Cyptococcus
-0.7
+0.4
-0.6
+0.3
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.4
+0.2
-0.2
+0.0
-0.2
phage
phage_bap4
+0.2
-0.0
+0.0
-0.6
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.5
+0.0
-0.1
-0.1
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.3
-0.3
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.4
-0.1
-0.2
+0.1
+0.3
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.5
+0.2
-0.1
+0.2
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.3
+0.4
-0.0
-0.2
complex community
Community=guar; Passage=4
+0.4
-0.6
+0.4
-0.5
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.5
+0.6
-0.1
+0.0
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.4
+0.3
-0.2
-0.0
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
+0.4
-0.2
-0.2
-0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.3
-0.1
-0.3
+0.1
+0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
+0.3
+0.1
+0.4
-0.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.4
+0.2
+0.0
+0.1
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
+0.3
-0.3
+0.3
+0.1
complex community
Community=guar; Passage=4
+0.1
-0.7
-0.3
+0.2
+1.1
complex community
Community=guar; Passage=4
+0.2
+0.2
+0.4
-0.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.3
+0.4
-0.1
+0.2
+0.3
vitamin
M9 with Supernatant from Cyptococcus
+0.2
-0.3
-0.1
+0.3
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.3
+0.4
+0.0
+0.0
+0.4
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.2
-0.2
+0.4
+0.3
complex community
Community=arabino-guar; Passage=4
+0.1
+0.0
+0.5
+0.4
-0.0
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