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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3427 and GFF3428 are separated by 4 nucleotides
GFF3428 and GFF3429 are separated by 16 nucleotides
GFF3429 and GFF3430 are separated by 7 nucleotides
GFF3430 and GFF3431 are separated by 186 nucleotides
GFF3427 - FIG01006093: hypothetical protein, at 250,970 to 251,479
GFF3427
GFF3428 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-), at 251,484 to 252,296
GFF3428
GFF3429 - Transcriptional regulator, AraC family, at 252,313 to 253,233
GFF3429
GFF3430 - Transcriptional regulator, LysR family, at 253,241 to 254,143
GFF3430
GFF3431 - Glutaryl-CoA dehydrogenase (EC 1.3.8.6), at 254,330 to 255,529
GFF3431
Group
Condition
GFF3427
GFF3428
GFF3429
GFF3430
GFF3431
complex community
Community=guar; Passage=4
-1.5
-0.2
-0.1
+0.1
-0.7
complex community
Community=arabino-guar; Passage=4
-1.6
-0.1
+0.9
-0.4
-0.5
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.7
+0.3
-0.4
-1.0
complex community
Community=Locust bean gum; Passage=4
-0.8
-0.3
-0.0
-0.1
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
-1.0
+0.1
-0.0
-0.4
-0.1
complex community
Community=guar; Passage=4
-0.4
+0.6
+0.2
-0.7
-0.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-1.2
-0.2
+0.2
-0.3
+0.2
complex community
Community=Locust bean gum; Passage=4
+0.3
+0.8
-1.2
-0.3
-0.7
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.6
+0.0
-0.0
-0.2
-0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-1.1
-0.1
+0.3
-0.1
+0.0
complex community
Community=arabino-guar; Passage=4
-1.0
-0.2
+0.2
+0.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.8
+0.5
-0.4
+0.1
-0.2
complex community
Community=Locust bean gum; Passage=4
-0.3
-0.0
+0.2
-0.1
-0.5
complex community
Community=arabino-guar; Passage=4
+1.0
+0.3
-1.0
-0.3
-0.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.6
+0.0
+0.0
-0.4
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.6
-0.2
-0.1
-0.0
+0.4
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.7
+0.2
+0.1
+0.0
-0.1
complex community
Community=Kojac gum; Passage=4
+0.0
+0.1
+0.4
+0.1
-1.1
vitamin
M9 with Supernatant from Cyptococcus
-0.7
+0.0
+0.1
-0.1
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.6
-0.0
+0.4
+0.2
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
+0.1
-0.1
-0.5
+0.6
complex community
Community=Kojac gum; Passage=1
+0.5
-0.1
-0.1
-0.3
-0.2
complex community
Community=arabino-guar; Passage=4
+0.3
+0.6
+0.1
-0.4
-0.7
phage
phage_bap4
+0.4
+0.1
-0.2
-0.3
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.6
+0.3
+0.2
-0.3
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.6
+0.3
+0.0
+0.0
+0.3
vitamin
M9 with Supernatant from Cyptococcus
+0.1
+0.1
+0.5
-0.7
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
+0.3
+0.1
-0.3
+0.4
complex community
Community=guar; Passage=4
+1.3
+0.3
-0.9
+0.4
-0.6
complex community
Community=guar; Passage=4
+0.6
-0.2
-0.0
+0.2
+0.2
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