Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_17510 and PS417_17515 overlap by 20 nucleotidesPS417_17515 and PS417_17520 are separated by 135 nucleotidesPS417_17520 and PS417_17525 are separated by 0 nucleotidesPS417_17525 and PS417_17530 are separated by 50 nucleotides PS417_17510: PS417_17510 - histidine kinase, at 3,824,007 to 3,825,908 _17510 PS417_17515: PS417_17515 - GfdT protein, at 3,825,889 to 3,827,034 _17515 PS417_17520: PS417_17520 - membrane protein, at 3,827,170 to 3,827,976 _17520 PS417_17525: PS417_17525 - pyridine nucleotide-disulfide oxidoreductase, at 3,827,977 to 3,829,221 _17525 PS417_17530: PS417_17530 - ArsR family transcriptional regulator, at 3,829,272 to 3,829,607 _17530
Group Condition PS417_17510 PS417_17515 PS417_17520 PS417_17525 PS417_17530
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.8 -2.0 N.D. +0.3 -0.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.4 -1.7 N.D. +0.0 +0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.8 -1.6 N.D. +0.0 -0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.9 -1.9 N.D. +0.1 -0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -4.0 -1.2 N.D. -0.1 -0.1
carbon source Gly-Glu (C) -1.5 -2.0 N.D. +0.0 +0.1
carbon source Gly-Glu (C) -1.7 -1.7 N.D. +0.1 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -0.9 N.D. -0.0 -0.4
carbon source Putrescine (C) -0.9 -1.0 N.D. -0.0 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -0.9 N.D. -0.4 +0.1
carbon source Inosine (C) -0.7 -1.1 N.D. -0.0 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -0.5 N.D. -0.1 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -0.2 N.D. -0.1 -0.4
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.0 -1.1 N.D. -0.1 -0.6
carbon source Inosine (C) -0.9 -0.7 N.D. -0.1 +0.1
carbon source Putrescine (C) -0.7 -0.8 N.D. -0.1 +0.1
carbon source 2'-Deoxyinosine 5 mM (C) -0.3 -0.3 N.D. +0.3 -1.2
soil soil sample 3; outgrowth in LB +0.3 +1.0 N.D. -0.3 -0.4
carbon source pyruvate (C) +0.6 +0.8 N.D. -0.2 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +0.9 N.D. -0.3 +0.3
rhizosphere rhizosphere sample 8; outgrowth in LB +0.3 +2.2 N.D. -0.1 -0.1
soil soil sample 8; outgrowth in LB +0.7 +1.9 N.D. +0.0 -0.1
soil soil sample 5; outgrowth in LB +1.9 +2.2 N.D. +0.1 -0.5
soil soil sample 6; outgrowth in LB +2.0 +2.4 N.D. -0.1 -0.5
soil soil sample 2; outgrowth in LB +2.0 +1.7 N.D. +0.1 +0.0
rhizosphere rhizosphere sample 2; outgrowth in LB +1.8 +2.6 N.D. +0.5 +0.1
root root sample 6; outgrowth in LB +2.3 +3.6 N.D. +0.3 -0.7
soil soil sample 4; outgrowth in LB +3.1 +3.2 N.D. +0.1 -0.4
rhizosphere rhizosphere sample 1; outgrowth in LB +3.0 +3.0 N.D. +0.6 -0.2
soil soil sample 7; outgrowth in LB +5.4 +4.1 N.D. -0.1 -0.1
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PS417_17515
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PS417_17525
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