Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_17495 and PS417_17500 are separated by 108 nucleotidesPS417_17500 and PS417_17505 are separated by 15 nucleotidesPS417_17505 and PS417_17510 are separated by 146 nucleotidesPS417_17510 and PS417_17515 overlap by 20 nucleotides PS417_17495: PS417_17495 - multidrug ABC transporter permease, at 3,821,731 to 3,822,522 _17495 PS417_17500: PS417_17500 - sulfurtransferase, at 3,822,631 to 3,823,179 _17500 PS417_17505: PS417_17505 - LuxR family transcriptional regulator, at 3,823,195 to 3,823,860 _17505 PS417_17510: PS417_17510 - histidine kinase, at 3,824,007 to 3,825,908 _17510 PS417_17515: PS417_17515 - GfdT protein, at 3,825,889 to 3,827,034 _17515
Group Condition PS417_17495 PS417_17500 PS417_17505 PS417_17510 PS417_17515
carbon source Gly-Glu (C) -3.4 -0.9 -3.4 -1.5 -2.0
carbon source Gly-Glu (C) -3.6 -0.9 -3.4 -1.7 -1.7
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 -0.4 -0.7 -4.8 -2.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 +0.1 -0.4 -3.8 -1.6
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.3 -0.1 -4.4 -1.7
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.3 -0.1 -3.9 -1.9
carbon source Putrescine (C) -2.1 -0.4 -1.3 -0.9 -1.0
carbon source Ethanol (C) -2.5 -0.8 -2.9 +0.2 +0.2
carbon source Putrescine (C) -2.0 -0.3 -1.0 -0.7 -0.8
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.0 +0.3 -4.0 -1.2
carbon source Fumarate (C) -2.0 -0.9 -2.5 +0.0 +0.6
carbon source Ethanol (C) -2.6 -0.7 -2.0 +0.3 +0.4
carbon source acetate (C) -2.6 -0.6 -1.9 +0.3 +0.5
carbon source Uridine (C) -1.2 -0.7 -1.3 -0.0 -0.5
carbon source NAG (C) -1.7 -0.3 -1.3 -0.1 -0.2
carbon source octanoate (C) -1.2 -0.2 -1.9 +0.1 -0.3
carbon source Fumarate (C) -1.7 -0.5 -1.7 +0.1 +0.2
carbon source octanoate (C) -1.0 -0.5 -1.7 +0.1 -0.4
carbon source acetate (C) -2.1 -0.7 -1.0 +0.1 +0.4
carbon source L-Valine (C) -0.9 -0.6 -2.5 +0.2 +0.9
rhizosphere rhizosphere sample 8; outgrowth in LB -0.2 +0.5 -0.8 +0.3 +2.2
soil soil sample 2; outgrowth in LB -0.5 +0.3 -0.2 +2.0 +1.7
soil soil sample 8; outgrowth in LB +0.3 +0.5 +0.3 +0.7 +1.9
soil soil sample 6; outgrowth in LB -0.5 +0.7 +0.1 +2.0 +2.4
rhizosphere rhizosphere sample 2; outgrowth in LB +0.3 +0.9 -0.3 +1.8 +2.6
soil soil sample 5; outgrowth in LB -0.1 +0.9 +0.3 +1.9 +2.2
soil soil sample 4; outgrowth in LB -0.2 +0.1 +0.0 +3.1 +3.2
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 +0.5 +0.0 +3.0 +3.0
root root sample 6; outgrowth in LB +0.2 +1.2 +0.2 +2.3 +3.6
soil soil sample 7; outgrowth in LB -0.2 +0.3 -0.5 +5.4 +4.1
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