Fitness for 5 genes in Variovorax sp. SCN45

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 61 experiments or choose conditions or try the comparative fitness browser

500 ntGFF3417 and GFF3418 overlap by 8 nucleotidesGFF3418 and GFF3419 are separated by 74 nucleotidesGFF3419 and GFF3420 overlap by 4 nucleotidesGFF3420 and GFF3421 are separated by 100 nucleotides GFF3417 - Alkanesulfonates transport system permease protein, at 240,959 to 241,729 GFF3417 GFF3418 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 241,722 to 242,501 GFF3418 GFF3419 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 242,576 to 243,535 GFF3419 GFF3420 - Transcriptional regulator, AcrR family, at 243,532 to 244,284 GFF3420 GFF3421 - Acetoacetyl-CoA synthetase (EC 6.2.1.16), at 244,385 to 246,388 GFF3421
Group Condition GFF3417 GFF3418 GFF3419 GFF3420 GFF3421
complex community Community=guar; Passage=4 N.D. -0.7 -1.7 +0.1 -0.2
complex community Community=arabino-guar; Passage=4 N.D. -0.2 -1.6 -0.3 -0.3
complex community Community=guar; Passage=4 N.D. -0.8 -1.9 +0.4 +0.3
complex community Community=guar; Passage=4 N.D. -0.2 -1.6 +0.2 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. -0.9 -0.2 -0.0 -0.1
complex community Community=arabino-guar; Passage=4 N.D. -0.7 -0.5 -0.1 +0.1
complex community Community=Locust bean gum; Passage=4 N.D. -0.9 -0.2 -0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.3 -0.4 -0.3 +0.1
complex community Community=arabino-guar; Passage=4 N.D. +0.1 -0.4 -0.5 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.7 -0.1 -0.1 +0.1
phage phage_bap4 N.D. -0.6 -0.2 +0.1 -0.1
no phage control no phage control N.D. -0.4 +0.1 -0.2 -0.0
phage phage_bap4 N.D. -0.3 +0.1 -0.2 -0.1
no phage control no phage control N.D. -0.5 -0.1 -0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. -0.2 -0.6 +0.2 +0.1
no phage control no phage control N.D. +0.1 -0.5 -0.1 +0.0
phage phage_bap4 N.D. -0.5 -0.2 +0.0 +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. -0.5 -0.2 +0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. -0.2 -0.5 +0.2 +0.2
phage phage_bap4 N.D. -0.5 +0.4 -0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.4 +0.2 +0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.0 +0.2 -0.4 +0.1
complex community Community=Locust bean gum; Passage=4 N.D. -0.2 +0.2 -0.3 +0.2
complex community Community=Locust bean gum; Passage=4 N.D. +0.1 -0.4 +0.2 +0.2
complex community Community=guar; Passage=4 N.D. +0.5 -0.2 +0.1 -0.2
phage phage_bap4 N.D. -0.3 +0.4 +0.0 +0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. +0.4 +0.1 -0.2 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.1 +0.4 +0.2 -0.1
complex community Community=Kojac gum; Passage=4 N.D. +0.6 -0.7 +0.6 +0.0
complex community Community=arabino-guar; Passage=4 N.D. +0.4 +0.1 -0.0 +0.2
remove
GFF3417
plot		 remove
GFF3418
plot		 remove
GFF3419		 remove
GFF3420
plot		 remove
GFF3421
plot