Fitness for 5 genes in Variovorax sp. SCN45

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 61 experiments or choose conditions or try the comparative fitness browser

500 ntGFF3415 and GFF3416 are separated by 41 nucleotidesGFF3416 and GFF3417 overlap by 4 nucleotidesGFF3417 and GFF3418 overlap by 8 nucleotidesGFF3418 and GFF3419 are separated by 74 nucleotides GFF3415 - Cyclase, at 239,335 to 240,141 GFF3415 GFF3416 - Alkanesulfonates transport system permease protein, at 240,183 to 240,962 GFF3416 GFF3417 - Alkanesulfonates transport system permease protein, at 240,959 to 241,729 GFF3417 GFF3418 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 241,722 to 242,501 GFF3418 GFF3419 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 242,576 to 243,535 GFF3419
Group Condition GFF3415 GFF3416 GFF3417 GFF3418 GFF3419
complex community Community=arabino-guar; Passage=4 -0.8 -2.2 N.D. +0.1 -0.4
complex community Community=guar; Passage=4 -0.2 +0.0 N.D. -0.7 -1.7
complex community Community=arabino-guar; Passage=4 -0.3 -0.2 N.D. -0.2 -1.6
complex community Community=Locust bean gum; Passage=4 -0.6 -0.4 N.D. -0.9 -0.2
complex community Community=guar; Passage=4 -0.2 +0.9 N.D. -0.8 -1.9
complex community Community=guar; Passage=4 -0.1 +0.3 N.D. -0.2 -1.6
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 -0.9 N.D. -0.5 -0.2
complex community Community=Locust bean gum; Passage=4 -0.8 -0.6 N.D. -0.2 +0.2
complex community Community=Kojac gum; Passage=4 -0.7 -0.6 N.D. +0.6 -0.7
complex community Community=arabino-guar; Passage=4 -0.5 +0.9 N.D. -0.7 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 +0.5 N.D. -0.9 -0.2
phage phage_bap4 -0.1 -0.6 N.D. -0.3 +0.4
phage phage_bap4 +0.1 +0.1 N.D. -0.6 -0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.1 +0.3 N.D. -0.2 -0.6
complex community Community=Locust bean gum; Passage=4 -0.7 +0.5 N.D. -0.0 -0.2
complex community Community=Locust bean gum; Passage=4 -0.6 +0.7 N.D. +0.1 -0.4
no phage control no phage control -0.1 +0.4 N.D. -0.4 +0.1
complex community Community=guar; Passage=4 -0.6 +0.2 N.D. +0.5 -0.2
phage phage_bap4 +0.1 +0.6 N.D. -0.5 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 +1.1 N.D. -0.2 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.0 +1.0 N.D. -0.3 -0.4
vitamin M9 with Supernatant from Cyptococcus -0.0 +0.7 N.D. -0.4 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 +0.7 N.D. -0.4 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 +0.6 N.D. -0.3 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 +0.9 N.D. -0.3 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 +0.8 N.D. -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 +0.5 N.D. -0.1 +0.4
vitamin M9 with Supernatant from Cyptococcus +0.0 +0.8 N.D. +0.4 -0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.2 +0.6 N.D. +0.4 +0.1
complex community Community=arabino-guar; Passage=4 -0.2 +1.0 N.D. +0.4 +0.1
remove
GFF3415
plot		 remove
GFF3416
plot		 remove
GFF3417		 remove
GFF3418
plot		 remove
GFF3419
plot