Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_17455 and PS417_17460 are separated by 300 nucleotidesPS417_17460 and PS417_17465 are separated by 78 nucleotidesPS417_17465 and PS417_17470 are separated by 38 nucleotidesPS417_17470 and PS417_17475 overlap by 4 nucleotides PS417_17455: PS417_17455 - cytochrome C, at 3,813,389 to 3,813,850 _17455 PS417_17460: PS417_17460 - Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data), at 3,814,151 to 3,815,998 _17460 PS417_17465: PS417_17465 - hypothetical protein, at 3,816,077 to 3,816,724 _17465 PS417_17470: PS417_17470 - LuxR family transcriptional regulator, at 3,816,763 to 3,817,389 _17470 PS417_17475: PS417_17475 - histidine kinase, at 3,817,386 to 3,818,648 _17475
Group Condition PS417_17455 PS417_17460 PS417_17465 PS417_17470 PS417_17475
carbon source Ethanol (C) -2.2 -2.3 N.D. -1.5 -1.7
carbon source Ethanol (C) -2.4 -2.1 N.D. -1.2 -1.7
carbon source Carbon source L-Citrulline 5 mM -1.0 -1.1 N.D. -1.7 -1.4
carbon source acetate (C) -2.5 -0.8 N.D. -0.9 -0.7
carbon source Carbon source L-Citrulline 5 mM -0.8 -1.4 N.D. -1.4 -1.2
carbon source Carbon source L-Citrulline 10 mM -1.6 -1.1 N.D. -0.9 -1.0
carbon source L-Arginine (C) -1.1 -1.4 N.D. -0.9 -1.2
carbon source Carbon source L-Citrulline 10 mM -1.7 -1.0 N.D. -0.6 -1.1
carbon source Fumarate (C) -1.8 -0.8 N.D. -1.1 -0.7
carbon source acetate (C) -1.7 -0.7 N.D. -0.7 -0.9
carbon source L-Arginine (C) -1.2 -1.2 N.D. -0.5 -1.0
carbon source Fumarate (C) -1.7 -0.9 N.D. +0.1 -0.6
carbon source Putrescine (C) -2.1 -0.1 N.D. -0.3 -0.1
carbon source Putrescine (C) -1.7 -0.1 N.D. -0.3 -0.2
carbon source Gly-Glu (C) -1.8 -0.3 N.D. -0.3 -0.1
carbon source 2-Deoxy-D-Ribose (C) -1.1 -0.6 N.D. -0.3 -0.2
carbon source D-Xylose (C) -0.8 -0.3 N.D. -0.7 -0.2
carbon source NAG (C) -1.5 -0.1 N.D. -0.4 -0.0
carbon source Gly-Glu (C) -2.3 -0.2 N.D. +0.4 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.7 +0.0 N.D. -1.2 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.1 N.D. -1.4 -0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.2 -0.2 N.D. -1.3 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -0.8 N.D. +0.4 +0.1
carbon source D-Glucose-6-Phosphate (C) -1.1 -0.3 N.D. +0.5 -0.1
phage JP1 MOI 0.1 +0.2 -0.5 N.D. +1.0 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.4 +0.2 N.D. -0.6 -0.5
phage P. simiae OR1 MOI 0.1 -0.7 +0.1 N.D. +0.8 +0.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.8 N.D. +0.6 +0.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +0.2 N.D. +2.0 +0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +0.0 N.D. +1.9 -0.1
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