Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3410 and GFF3411 are separated by 51 nucleotidesGFF3411 and GFF3412 are separated by 593 nucleotidesGFF3412 and GFF3413 overlap by 11 nucleotidesGFF3413 and GFF3414 are separated by 212 nucleotides GFF3410 - Transcriptional regulator, AraC family, at 233,653 to 234,780 GFF3410 GFF3411 - hypothetical protein, at 234,832 to 235,839 GFF3411 GFF3412 - Rrf2 family transcriptional regulator, group III, at 236,433 to 236,894 GFF3412 GFF3413 - Thioredoxin reductase (EC 1.8.1.9), at 236,884 to 237,786 GFF3413 GFF3414 - Fumarylacetoacetase (EC 3.7.1.2), at 237,999 to 239,324 GFF3414
Group Condition GFF3410 GFF3411 GFF3412 GFF3413 GFF3414
complex community Community=Kojac gum; Passage=4 -0.3 -0.1 N.D. -0.5 -0.7
complex community Community=guar; Passage=4 -0.5 -0.0 N.D. -0.9 -0.1
complex community Community=Locust bean gum; Passage=4 -0.7 +0.2 N.D. -0.5 -0.5
complex community Community=arabino-guar; Passage=4 -0.4 -0.0 N.D. -0.5 -0.3
phage phage_bap4 -0.3 -0.0 N.D. -0.1 -0.2
phage phage_bap4 -0.3 -0.1 N.D. -0.2 +0.0
complex community Community=Locust bean gum; Passage=1 -0.4 +0.0 N.D. -0.2 +0.1
no phage control no phage control -0.1 -0.0 N.D. +0.1 -0.2
phage phage_bap4 -0.3 -0.0 N.D. +0.1 -0.1
complex community Community=guar; Passage=4 +0.2 -0.1 N.D. -0.2 +0.0
phage phage_bap4 -0.4 -0.0 N.D. +0.3 +0.1
complex community Community=arabino-guar; Passage=4 +0.2 -0.0 N.D. -0.3 +0.1
complex community Community=arabino-guar; Passage=4 -0.2 -0.0 N.D. +0.5 -0.2
phage phage_bap4 -0.0 -0.1 N.D. +0.3 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.5 +0.0 N.D. -0.2 -0.0
phage phage_bap4 -0.2 -0.0 N.D. +0.4 +0.0
complex community Community=guar; Passage=4 -0.2 -0.1 N.D. +0.3 +0.3
complex community Community=Locust bean gum; Passage=4 +0.4 +0.2 N.D. -0.1 -0.1
complex community Community=arabino-guar; Passage=4 -0.1 -0.1 N.D. +0.3 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 +0.1 N.D. +0.3 -0.1
complex community Community=Locust bean gum; Passage=4 +0.6 +0.1 N.D. +0.1 -0.3
vitamin M9 with Supernatant from Cyptococcus +0.3 +0.1 N.D. +0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.2 +0.1 N.D. +0.1 +0.0
phage phage_bap4 +0.1 +0.1 N.D. +0.3 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 +0.0 N.D. +0.3 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 +0.1 N.D. +0.2 +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.4 +0.1 N.D. +0.2 +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.4 +0.1 N.D. +0.3 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL +0.6 +0.1 N.D. +0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.3 +0.2 N.D. +0.4 +0.1
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