Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_17435 and PS417_17440 are separated by 126 nucleotidesPS417_17440 and PS417_17445 are separated by 16 nucleotidesPS417_17445 and PS417_17450 are separated by 9 nucleotidesPS417_17450 and PS417_17455 are separated by 3 nucleotides PS417_17435: PS417_17435 - dehydrogenase, at 3,808,900 to 3,810,675 _17435 PS417_17440: PS417_17440 - beta-lactamase, at 3,810,802 to 3,811,734 _17440 PS417_17445: PS417_17445 - sulfur oxidation protein SoxZ, at 3,811,751 to 3,812,500 _17445 PS417_17450: PS417_17450 - amino acid ABC transporter substrate-binding protein, at 3,812,510 to 3,813,385 _17450 PS417_17455: PS417_17455 - cytochrome C, at 3,813,389 to 3,813,850 _17455
Group Condition PS417_17435 PS417_17440 PS417_17445 PS417_17450 PS417_17455
carbon source Gly-Glu (C) -3.9 -0.1 -0.6 -4.2 -2.3
carbon source Gly-Glu (C) -3.8 +0.4 +0.1 -5.2 -1.8
carbon source Ethanol (C) -2.5 +0.3 +0.4 -2.6 -2.4
carbon source acetate (C) -2.0 +0.2 +0.2 -2.1 -2.5
carbon source Putrescine (C) -2.1 -0.0 -0.4 -1.8 -1.7
carbon source Ethanol (C) -2.4 +0.4 +0.5 -2.1 -2.2
carbon source Fumarate (C) -1.9 -0.2 +0.1 -1.9 -1.7
carbon source Putrescine (C) -1.9 +0.2 +0.1 -1.8 -2.1
carbon source Fumarate (C) -2.1 +0.6 +0.3 -2.0 -1.8
carbon source NAG (C) -1.2 -0.1 -0.0 -1.4 -1.5
carbon source acetate (C) -1.7 +0.9 +0.7 -2.2 -1.7
carbon source D-Glucose-6-Phosphate (C) -1.6 +0.5 +0.2 -1.7 -1.1
carbon source NAG (C) -1.4 +0.8 +0.0 -1.6 -1.4
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) -1.0 -0.2 +0.3 -1.6 -1.0
carbon source D-Glucose-6-Phosphate (C) -1.0 +0.1 +0.3 -0.8 -0.9
carbon source L-Citrulline (C) -0.8 +0.3 +0.1 -0.9 -1.0
seeds Growth on radish seeds for 24 hours -0.0 -1.0 +0.5 -1.2 -0.4
carbon source Uridine (C) -1.0 +0.6 -0.2 -0.8 -0.7
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) -0.9 +0.4 +0.2 -1.2 -0.6
carbon source octanoate (C) -0.8 +0.3 +0.4 -0.8 -1.0
carbon source Carbon source L-Citrulline 10 mM -0.5 +1.3 -0.4 -0.4 -1.7
carbon source octanoate (C) -0.4 +0.7 +0.2 -0.9 -1.0
carbon source D-Fructose (C) -0.8 +0.8 +0.3 -0.6 -0.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 +0.1 -0.6 -1.1 +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.1 -1.2 +0.4 -0.7 +0.7
seeds Growth on radish seeds for 72 hours -0.3 +2.2 -0.7 -0.3 -0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -0.8 +0.4 +0.3 +1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +1.1 +0.5 -0.9 +0.6
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.0 +1.7 -0.5 +0.3 +0.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.3 +2.8 +0.1 -0.2 -0.0
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