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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF3402 and GFF3403 are separated by 36 nucleotides
GFF3403 and GFF3404 overlap by 11 nucleotides
GFF3404 and GFF3405 are separated by 142 nucleotides
GFF3405 and GFF3406 overlap by 4 nucleotides
GFF3402 - Tetrapartite efflux system, inner membrane component FusBC-like, at 3,448,235 to 3,449,185
GFF3402
GFF3403 - Mobile element protein, at 3,449,222 to 3,450,028
GFF3403
GFF3404 - Transposase for insertion sequences IS1326/IS1353, at 3,450,018 to 3,451,541
GFF3404
GFF3405 - hypothetical protein, at 3,451,684 to 3,452,577
GFF3405
GFF3406 - hypothetical protein, at 3,452,574 to 3,452,945
GFF3406
Group
Condition
GFF3402
GFF3403
GFF3404
GFF3405
GFF3406
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.5
+0.0
+0.1
+0.1
-0.5
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.4
+0.1
+0.1
-0.1
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.6
+0.1
+0.1
+0.0
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.4
+0.2
+0.1
+0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.6
+0.2
+0.1
-0.0
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.8
+0.1
+0.1
-0.1
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.5
+0.1
+0.1
-0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.5
+0.1
+0.1
-0.0
+0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.5
+0.1
+0.1
-0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.5
+0.1
+0.1
-0.0
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.6
+0.1
+0.1
+0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.7
+0.1
+0.0
+0.2
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.7
+0.2
+0.2
+0.0
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.7
+0.1
+0.1
+0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.6
+0.1
+0.1
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.6
+0.2
+0.1
+0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.5
+0.0
+0.1
+0.1
+0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.6
+0.1
+0.1
+0.0
+0.4
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