Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_17385	PS417_17390	PS417_17395	PS417_17400	PS417_17405
carbon source	octanoate (C)	-0.1	-3.6	-3.2	+0.5	+0.2
phage	Wcs_1	-0.3	-0.7	+0.2	-1.3	-2.6
root	root sample 6; outgrowth in LB	+0.0	+0.2	+0.2	-0.3	-4.5
carbon source	octanoate (C)	+0.2	-2.5	-2.7	+1.0	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.4	-0.4	-1.3	-1.7
carbon source	L-Valine (C)	-0.2	-0.8	-0.6	+0.4	-1.1
carbon source	2'-Deoxyinosine 5 mM (C)	+0.5	-0.3	-0.2	-0.0	-2.0
seeds	Growth on radish seeds for 72 hours	+0.1	-0.0	-0.1	-0.1	-2.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.5	+0.1	-0.2	-1.3
phage	JP1 MOI 1	-0.2	-0.8	+0.4	-0.4	-0.7
seeds	Growth on radish seeds for 72 hours	-0.4	+0.4	+0.3	+0.3	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.1	-0.4	+0.0	-1.3
soil	soil sample 2; outgrowth in LB	-0.3	+0.2	-0.2	+0.2	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.4	-0.1	+0.1	-0.1	-1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.5	+0.4	+0.5	-1.7
agar plate interaction control	Taped volatile agar plate with no fungus	-0.5	-0.9	-0.2	+0.2	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.4	+0.2	-0.2	-0.7
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.4	+0.2	-0.5	-0.0	+0.9
stress	1-ethyl-3-methylimidazolium chloride 200 mM	-0.2	-0.4	-0.1	+0.7	+0.7
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.2	+0.3	-0.0	-0.7	+1.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.5	+0.6	+1.1	-1.2
phage	P. simiae OR Antrim MOI 0.1	-0.1	-0.1	-0.3	-0.3	+1.7
carbon source	D-Glucose (C)	+0.4	-0.2	+0.2	+0.2	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.8	+0.0	-0.1	+0.1	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.2	+0.4	+0.4	+1.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.6	-0.4	+0.0	-0.0	+1.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.7	+0.3	+0.4	-0.1	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+2.1	+0.2	+0.4	-0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.8	+0.8	-0.3	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.8	+0.8	+0.1	+1.0	+1.4