Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_17375 and PS417_17380 are separated by 1 nucleotidesPS417_17380 and PS417_17385 are separated by 2 nucleotidesPS417_17385 and PS417_17390 are separated by 110 nucleotidesPS417_17390 and PS417_17395 overlap by 4 nucleotides PS417_17375: PS417_17375 - C4-dicarboxylate ABC transporter, at 3,795,369 to 3,795,896 _17375 PS417_17380: PS417_17380 - membrane protein, at 3,795,898 to 3,797,178 _17380 PS417_17385: PS417_17385 - aldose epimerase, at 3,797,181 to 3,798,038 _17385 PS417_17390: PS417_17390 - DSBA oxidoreductase, at 3,798,149 to 3,799,294 _17390 PS417_17395: PS417_17395 - MFS transporter, at 3,799,291 to 3,800,934 _17395
Group Condition PS417_17375 PS417_17380 PS417_17385 PS417_17390 PS417_17395
carbon source octanoate (C) +0.4 +0.2 -0.1 -3.6 -3.2
carbon source octanoate (C) -0.2 +0.3 +0.2 -2.5 -2.7
agar plate interaction control Taped volatile agar plate with no fungus -0.8 -0.2 -0.5 -0.9 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -0.6 -0.0 -0.4 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.8 -0.5 -0.1 -0.7 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.4 -0.6 -0.2 -0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -1.1 -0.4 -0.5 +0.0 -0.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -0.7 -0.5 -0.2 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -1.0 +0.1 -0.5 +0.1
carbon source L-Valine (C) -0.8 +0.9 -0.2 -0.8 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.5 +0.3 -1.0 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -1.3 +0.4 -0.4 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.8 +0.3 +0.2 -0.2
phage JP1 MOI 1 -0.7 +0.3 -0.2 -0.8 +0.4
stress Gentamicin 0.008 mg/ml +0.9 -0.2 -0.1 -1.1 -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 -0.5 +0.0 +0.2 -0.5
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.3 -1.0 +0.7 +0.3 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.8 +0.4 +0.4 +0.4 +0.0
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 -1.0 -0.1 +0.5 +0.6
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -0.4 +0.7 +0.7 -0.0
stress Neomycin 0.04 mg/ml +0.6 +0.4 -0.5 -0.3 +0.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.3 +0.5 +0.5 -0.3 -0.5
stress methylglyoxal 0.032 vol% -0.4 +1.0 +0.1 +0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.9 +0.8 +0.2 +1.0 -0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml +1.0 -0.4 +0.4 -0.3 +0.4
stress R2A with Polymyxin B sulfate 0.002 mg/ml +1.3 +0.1 +0.6 -0.4 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.3 +1.8 +0.0 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 -0.1 +2.1 +0.2 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.0 +0.5 +1.8 +0.8 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.3 -0.3 +0.6 +0.8 +0.8
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