Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3389 and GFF3390 are separated by 11 nucleotidesGFF3390 and GFF3391 are separated by 139 nucleotidesGFF3391 and GFF3392 are separated by 106 nucleotidesGFF3392 and GFF3393 are separated by 31 nucleotides GFF3389 - Glycosyl transferases, related to UDP-glucuronosyltransferase, at 209,906 to 211,126 GFF3389 GFF3390 - Transcriptional activator of acetoin dehydrogenase operon AcoR, at 211,138 to 213,063 GFF3390 GFF3391 - Chlorogenate esterase, at 213,203 to 215,116 GFF3391 GFF3392 - Transcriptional regulator, AraC family, at 215,223 to 216,101 GFF3392 GFF3393 - Benzoate ABC transporter, ATP-binding protein 2, at 216,133 to 216,834 GFF3393
Group Condition GFF3389 GFF3390 GFF3391 GFF3392 GFF3393
complex community Community=Locust bean gum; Passage=4 -3.1 +0.6 -0.1 +0.0 +0.2
complex community Community=Locust bean gum; Passage=4 -0.4 -0.0 -0.2 -0.4 -0.2
complex community Community=arabino-guar; Passage=4 -0.7 +0.3 -0.4 +0.1 -0.2
phage phage_bap4 -0.4 -0.2 -0.1 -0.1 -0.1
phage phage_bap4 -0.7 +0.0 -0.1 +0.0 -0.1
complex community Community=arabino-guar; Passage=4 -1.3 +0.2 -0.4 +0.0 +0.8
phage phage_bap4 -0.7 -0.2 +0.0 -0.0 +0.3
no phage control no phage control -0.8 -0.0 +0.1 -0.2 +0.3
complex community Community=guar; Passage=4 -0.6 -0.1 +0.0 -0.4 +0.6
phage phage_bap4 -0.9 +0.1 +0.0 -0.1 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.6 +0.2 +0.0 -0.1 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.4 -0.2 -0.1 -0.1 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL -0.5 +0.2 +0.0 +0.1 -0.0
complex community Community=Locust bean gum; Passage=4 -0.6 +0.4 -0.0 +0.3 -0.1
phage phage_bap4 -0.4 -0.1 +0.1 -0.0 +0.4
phage phage_bap4 -0.3 +0.0 -0.0 +0.1 +0.3
phage phage_bap4 -0.3 -0.0 +0.0 -0.1 +0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.3 +0.1 +0.0 -0.0 +0.3
complex community Community=Kojac gum; Passage=4 -1.0 +0.3 +0.2 +0.1 +0.5
complex community Community=arabino-guar; Passage=4 +0.7 +0.3 -0.2 +0.4 -1.0
no phage control no phage control -0.5 +0.1 +0.1 +0.0 +0.5
no phage control no phage control -0.2 +0.1 +0.1 +0.0 +0.4
complex community Community=guar; Passage=4 +0.4 +0.1 +0.1 +0.0 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.6 +0.2 +0.0 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 +0.0 +0.1 +0.1 +0.5
complex community Community=guar; Passage=4 +0.3 -0.1 -0.2 +0.2 +0.8
vitamin M9 with calcium pantothenate 10 mg/mL +0.4 +0.1 +0.0 +0.2 +0.2
phage phage_bap4 +0.1 +0.1 +0.2 -0.0 +0.5
complex community Community=arabino-guar; Passage=4 +0.8 -0.1 +0.5 -0.4 +0.4
complex community Community=Locust bean gum; Passage=4 +1.2 -0.1 -0.4 +0.3 +0.9
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