Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3387 and GFF3388 are separated by 64 nucleotidesGFF3388 and GFF3389 overlap by 4 nucleotidesGFF3389 and GFF3390 are separated by 11 nucleotidesGFF3390 and GFF3391 are separated by 139 nucleotides GFF3387 - no description, at 209,057 to 209,179 GFF3387 GFF3388 - Transcriptional regulator, AcrR family, at 209,244 to 209,909 GFF3388 GFF3389 - Glycosyl transferases, related to UDP-glucuronosyltransferase, at 209,906 to 211,126 GFF3389 GFF3390 - Transcriptional activator of acetoin dehydrogenase operon AcoR, at 211,138 to 213,063 GFF3390 GFF3391 - Chlorogenate esterase, at 213,203 to 215,116 GFF3391
Group Condition GFF3387 GFF3388 GFF3389 GFF3390 GFF3391
complex community Community=Locust bean gum; Passage=4 N.D. -0.2 -3.1 +0.6 -0.1
complex community Community=arabino-guar; Passage=4 N.D. -0.1 -1.3 +0.2 -0.4
complex community Community=arabino-guar; Passage=4 N.D. -0.5 -0.7 +0.3 -0.4
complex community Community=guar; Passage=4 N.D. -0.3 -0.6 -0.1 +0.0
phage phage_bap4 N.D. -0.0 -0.7 -0.2 +0.0
phage phage_bap4 N.D. -0.2 -0.7 +0.0 -0.1
complex community Community=guar; Passage=4 N.D. -0.8 +0.3 -0.1 -0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. -0.2 -0.4 -0.2 -0.1
phage phage_bap4 N.D. -0.0 -0.9 +0.1 +0.0
no phage control no phage control N.D. +0.0 -0.8 -0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.2 -0.6 +0.2 +0.0
phage phage_bap4 N.D. +0.1 -0.4 -0.2 -0.1
phage phage_bap4 N.D. -0.1 -0.4 -0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. -0.3 -0.3 +0.0 +0.1
complex community Community=Kojac gum; Passage=4 N.D. +0.0 -1.0 +0.3 +0.2
no phage control no phage control N.D. -0.1 -0.5 +0.1 +0.1
complex community Community=Locust bean gum; Passage=4 N.D. -0.1 -0.6 +0.4 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.1 -0.5 +0.2 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. -0.1 -0.2 +0.2 +0.1
complex community Community=Locust bean gum; Passage=4 N.D. +0.5 -0.4 -0.0 -0.2
no phage control no phage control N.D. +0.2 -0.2 +0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.2 -0.1 +0.3 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL N.D. +0.2 +0.0 +0.3 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.1 +0.6 +0.2 +0.0
complex community Community=Locust bean gum; Passage=4 N.D. -0.1 +1.2 -0.1 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.2 +0.4 +0.1 -0.0
complex community Community=arabino-guar; Passage=4 N.D. -0.1 +0.7 +0.3 -0.2
phage phage_bap4 N.D. +0.3 +0.1 +0.1 +0.2
complex community Community=guar; Passage=4 N.D. +0.2 +0.4 +0.1 +0.1
complex community Community=arabino-guar; Passage=4 N.D. -0.2 +0.8 -0.1 +0.5
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