Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_01710	PS417_01715	PS417_01720	PS417_01725	PS417_01730
carbon source	L-Histidine (C)	+0.9	-2.3	-4.2	-1.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-1.6	-2.5	-1.2	-0.7
soil	soil sample 3; outgrowth in LB	-5.9	-0.3	+0.1	-0.3	-0.3
nitrogen source	Inosine (N)	-5.5	+0.1	-0.1	-0.2	-0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	-5.1	+0.3	-0.4	-0.4	+0.0
soil	soil sample 7; outgrowth in LB	-5.8	+0.3	-0.1	-0.0	-0.0
soil	soil sample 4; outgrowth in LB	-5.8	+0.5	+0.2	-0.1	+0.2
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-3.1	-1.4	-0.0	-0.2	-0.0
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-4.0	-0.4	+0.1	-0.1	+0.1
carbon source	NAG (C)	-3.3	-0.5	-0.2	-0.2	-0.2
carbon source	Inosine (C)	-3.5	-0.4	+0.1	-0.1	-0.2
phage	P. simiae ORA MOI 1	-0.9	-2.7	-0.0	-0.3	-0.3
soil	soil sample 8; outgrowth in LB	-2.9	-0.7	-0.1	-0.1	-0.3
carbon source	L-Histidine (C)	+1.0	-0.9	-3.1	-1.1	+0.2
carbon source	Putrescine (C)	-3.5	+0.0	+0.1	-0.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.9	-1.4	+0.1	-0.9	+0.1
carbon source	Gly-Glu (C)	-3.1	-0.3	+0.0	-0.2	-0.2
carbon source	Gly-Glu (C)	-2.7	-0.6	+0.1	-0.3	-0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	-3.3	-0.5	+0.2	-0.0	-0.0
soil	soil sample 2; outgrowth in LB	-3.0	-0.1	-0.0	-0.4	+0.1
stress	methylglyoxal 0.032 vol%	-0.8	-1.5	+0.1	-0.5	-0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.7	-0.4	+0.3	-0.4	-0.1
soil	soil sample 6; outgrowth in LB	-3.7	+0.5	-0.1	-0.2	+0.1
carbon source	D-Glucose-6-Phosphate (C)	-2.8	+0.2	-0.1	-0.4	-0.3
carbon source	D-Sorbitol (C)	-2.3	+0.3	+0.2	-0.5	-0.5
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-2.6	+0.8	-0.1	-0.3	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.7	+1.3	+0.5	-0.2	-0.3
carbon source	L-Valine (C)	-1.9	+1.6	-0.1	-0.0	-0.5
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.9	+1.4	+0.3	-0.6	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	+1.6	-0.3	+0.2	+0.5