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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3374 and GFF3375 overlap by 4 nucleotides
GFF3375 and GFF3376 are separated by 30 nucleotides
GFF3376 and GFF3377 are separated by 58 nucleotides
GFF3377 and GFF3378 are separated by 79 nucleotides
GFF3374 - no description, at 194,252 to 194,371
GFF3374
GFF3375 - DNA-binding transcriptional regulator, MocR family / aminotransferase domain, at 194,368 to 195,756
GFF3375
GFF3376 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 195,787 to 197,343
GFF3376
GFF3377 - Enoyl-CoA hydratase (EC 4.2.1.17) @ Enoyl-CoA hydratase EchA5 (EC 4.2.1.17), at 197,402 to 198,184
GFF3377
GFF3378 - hypothetical protein, at 198,264 to 199,076
GFF3378
Group
Condition
GFF3374
GFF3375
GFF3376
GFF3377
GFF3378
phage
phage_bap4
-1.0
-0.1
-0.0
-4.2
-0.0
complex community
Community=Locust bean gum; Passage=4
-1.9
-0.3
-0.3
-2.6
+0.2
complex community
Community=Kojac gum; Passage=4
-1.6
-0.1
-0.3
-2.7
-0.2
complex community
Community=arabino-guar; Passage=4
+0.4
-0.4
-0.5
-2.9
-0.9
complex community
Community=Kojac gum; Passage=1
+0.0
-0.1
-0.1
-2.9
-0.1
complex community
Community=arabino-guar; Passage=4
+0.5
-0.3
-0.2
-2.7
+0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.3
-0.1
-0.2
-1.7
+0.0
complex community
Community=guar; Passage=4
-3.8
+0.4
-0.4
+1.3
+0.2
complex community
Community=Locust bean gum; Passage=4
-2.5
+0.2
+0.1
+0.3
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.0
+0.5
-2.6
+0.5
complex community
Community=Locust bean gum; Passage=4
+0.9
+0.6
-0.0
-2.7
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.3
+0.1
-0.1
-1.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.5
-0.0
-0.0
-0.9
+0.4
phage
phage_bap4
+0.4
-0.0
+0.0
-1.3
-0.1
phage
phage_bap4
+0.3
+0.1
-0.2
-1.1
+0.0
phage
phage_bap4
+0.0
-0.1
+0.1
-1.1
+0.1
complex community
Community=arabino-guar; Passage=4
+0.3
-0.3
-0.1
-0.6
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.9
-0.1
-0.2
+1.4
+0.3
complex community
Community=arabino-guar; Passage=4
-0.3
+0.1
-0.2
+0.7
+0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.4
-0.1
+0.0
+1.2
+0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.6
+0.2
+0.0
+1.3
-0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.3
-0.2
+0.1
+1.0
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
-0.1
-0.1
+1.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
-0.1
+0.1
+1.2
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
+0.1
-0.0
+1.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.3
-0.0
-0.3
+1.6
+0.0
complex community
Community=guar; Passage=4
+0.9
-0.1
-0.1
+0.3
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.3
+0.1
+0.1
+1.4
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.2
+0.0
-0.1
+1.1
+0.3
complex community
Community=guar; Passage=4
-0.5
-0.2
+0.4
+3.3
-0.2
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