Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_17255	PS417_17260	PS417_17265	PS417_17270	PS417_17275
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	N.D.	-1.2	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	N.D.	-1.2	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	N.D.	-1.1	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	N.D.	-0.6	-0.4
stress	Neomycin 0.04 mg/ml	N.D.	N.D.	N.D.	-0.6	-0.4
carbon source	L-Valine (C)	N.D.	N.D.	N.D.	-0.6	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	N.D.	-0.6	-0.2
supernatant control	Vogels_fungal_media 0.1X	N.D.	N.D.	N.D.	-0.3	-0.6
soil	soil sample 5; outgrowth in LB	N.D.	N.D.	N.D.	-0.3	-0.6
soil	soil sample 3; outgrowth in LB	N.D.	N.D.	N.D.	-0.5	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	N.D.	N.D.	-0.3	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	N.D.	-0.4	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	N.D.	+0.4	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	N.D.	N.D.	+0.4	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	N.D.	+0.5	-0.6
phage	P. simiae OR1 MOI 0.1	N.D.	N.D.	N.D.	+0.5	-0.6
phage	JP1 MOI 0.1	N.D.	N.D.	N.D.	-0.4	+0.4
phage	P. simiae ORA MOI 0.1	N.D.	N.D.	N.D.	+0.6	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	N.D.	N.D.	-0.4	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	N.D.	N.D.	+0.6	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	N.D.	+0.6	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	N.D.	+0.9	-0.3
seeds	Growth on radish seeds for 72 hours	N.D.	N.D.	N.D.	+0.9	-0.3
stress	R2A with Fusaric 120 ug/mL	N.D.	N.D.	N.D.	+0.2	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	N.D.	+0.2	+0.6
stress	Doxycycline hyclate 0.001 mg/ml	N.D.	N.D.	N.D.	+0.2	+0.6
solid stress	80% Methanol 3 mM; solid stress	N.D.	N.D.	N.D.	+0.5	+0.4
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	N.D.	N.D.	+0.7	+0.3
solid stress	Fraxetin 3 mM; solid stress	N.D.	N.D.	N.D.	+0.3	+0.7
stress	1-ethyl-3-methylimidazolium chloride 200 mM	N.D.	N.D.	N.D.	+0.4	+0.9