Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_17250 and PS417_17255 are separated by 56 nucleotidesPS417_17255 and PS417_17260 are separated by 32 nucleotidesPS417_17260 and PS417_17265 are separated by 279 nucleotidesPS417_17265 and PS417_17270 are separated by 207 nucleotides PS417_17250: PS417_17250 - tRNA-Leu, at 3,769,309 to 3,769,393 _17250 PS417_17255: PS417_17255 - tRNA-His, at 3,769,450 to 3,769,525 _17255 PS417_17260: PS417_17260 - tRNA-Arg, at 3,769,558 to 3,769,634 _17260 PS417_17265: PS417_17265 - methenyltetrahydrofolate cyclohydrolase, at 3,769,914 to 3,770,768 _17265 PS417_17270: PS417_17270 - D-alanyl-D-alanine endopeptidase, at 3,770,976 to 3,771,899 _17270
Group Condition PS417_17250 PS417_17255 PS417_17260 PS417_17265 PS417_17270
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -1.1
soil soil sample 6; outgrowth in LB N.D. N.D. N.D. N.D. -0.7
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. N.D. N.D. -0.6
stress Neomycin 0.04 mg/ml N.D. N.D. N.D. N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. N.D. N.D. -0.6
carbon source L-Valine (C) N.D. N.D. N.D. N.D. -0.6
agar plate interaction control Taped volatile agar plate with no fungus N.D. N.D. N.D. N.D. -0.5
soil soil sample 3; outgrowth in LB N.D. N.D. N.D. N.D. -0.5
phage JP1 MOI 10 N.D. N.D. N.D. N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.5
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. N.D. N.D. N.D. +0.5
solid stress 80% Methanol 3 mM; solid stress N.D. N.D. N.D. N.D. +0.5
solid stress Fraxetin 2 mM; solid stress N.D. N.D. N.D. N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +0.5
solid stress Scopoletin 0.5 mM; solid stress N.D. N.D. N.D. N.D. +0.5
stress Lomefloxacin 0.0001 mM N.D. N.D. N.D. N.D. +0.5
liquid stress Scopoletin 3 mM; liquid stress N.D. N.D. N.D. N.D. +0.5
phage P. simiae OR1 MOI 0.1 N.D. N.D. N.D. N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +0.5
phage P. simiae ORA MOI 0.1 N.D. N.D. N.D. N.D. +0.6
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. N.D. N.D. +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +0.6
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. N.D. N.D. N.D. +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. +0.6
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. N.D. N.D. +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +0.9
seeds Growth on radish seeds for 72 hours N.D. N.D. N.D. N.D. +0.9
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