Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_17195	PS417_17200	PS417_17205	PS417_17210	PS417_17215
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-1.7	-0.5	+0.1	-4.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.1	-0.3	-0.4	-5.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-1.0	-0.3	+0.1	-4.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.3	-0.2	+0.1	-4.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.1	+0.0	-0.1	-5.0
stress	Neomycin 0.04 mg/ml	+0.1	+0.5	-0.3	-0.5	-4.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.6	-1.0	-0.0	-2.6
soil	soil sample 5; outgrowth in LB	+0.2	+0.7	-0.7	+0.1	-4.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.0	-0.0	-0.2	+0.2	-3.8
solid stress	Fraxetin 3 mM; solid stress	+0.0	-0.1	-0.1	+0.1	-3.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.0	-0.5	-0.1	+0.1	-3.1
supernatant control	Vogels_fungal_media 0.1X	+0.0	+0.1	+0.0	-0.1	-3.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-0.6	+0.1	-0.0	-2.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	-0.6	-0.1	+0.1	-3.0
solid stress	Fraxetin 3 mM; solid stress	+0.1	+0.1	+0.1	+0.2	-3.8
liquid stress	Fraxetin 3 mM; liquid stress	+0.1	+0.0	+0.1	-0.0	-3.5
solid stress	Fraxetin 3 mM; solid stress	+0.1	+0.3	-0.2	+0.1	-3.5
soil	soil sample 3; outgrowth in LB	+0.3	+0.2	-0.3	+0.1	-3.4
liquid stress	Fraxetin 3 mM; liquid stress	+0.0	+0.3	-0.0	+0.1	-3.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.7	-0.2	+0.2	-3.8
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.2	+0.1	+0.2	+0.1	-3.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.1	+0.6	-0.0	-0.2	-2.9
supernatant control	Vogels_fungal_media 0.1X	-0.2	+0.5	+0.1	-0.3	-2.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	+1.7	-1.0	-0.6	-1.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.0	+1.0	-0.6	-0.2	-1.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	+1.6	-0.7	-0.7	-1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	+1.6	-0.8	-0.5	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.5	+0.1	+0.3	+2.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.6	+1.2	-0.1	+2.0
stress	methylglyoxal 0.032 vol%	+0.5	+0.5	+0.3	+0.6	+3.0