Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_17170	PS417_17175	PS417_17185	PS417_17190	PS417_17195
phage	P. simiae OR Antrim MOI 0.1	+0.2	-0.7	-0.1	-0.9	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.5	+0.2	-1.4	+0.2
seeds	Growth on radish seeds for 72 hours	-0.4	-0.7	+0.0	-0.4	+0.3
stress	Neomycin 0.04 mg/ml	-1.9	+0.5	+0.1	+0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	-0.0	-0.3	-1.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.3	-0.3	-1.1	+0.1
stress	Gentamicin 0.008 mg/ml	-0.3	-0.3	+0.6	-0.6	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	-0.5	+0.3	-1.0	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.5	+0.2	-0.2	-0.7	-0.3
root	root sample 6; outgrowth in LB	-0.2	-1.0	+0.2	+0.6	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.6	+0.1	-0.5	-0.8	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.4	-0.5	-0.8	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.1	+0.3	-1.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.4	-0.2	-0.7	-0.0
phage	P. simiae OR Antrim MOI 1	+0.2	+0.4	+0.4	-1.0	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.1	+0.2	-0.2	-0.8	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.9	+0.3	+0.2	+0.7	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.4	-0.1	-0.6	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.6	+0.4	-0.1	+0.7	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.8	-0.3	-0.2	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.8	+0.0	+0.2	+1.0	+0.3
solid stress	Fraxetin 3 mM; solid stress	+1.1	+0.0	+0.1	-0.4	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	+0.6	-0.1	+0.9	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	+0.1	-0.2	+1.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.2	+0.6	+0.5	+0.4
soil	soil sample 4; outgrowth in LB	-0.1	-0.1	+0.0	+1.6	+0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.1	-0.1	+0.2	+1.4	-0.1
soil	soil sample 8; outgrowth in LB	+0.2	-0.5	+0.0	+1.8	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-0.1	+0.5	+1.2	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.6	+0.8	-0.1	+0.2