Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3343 and GFF3344 are separated by 58 nucleotidesGFF3344 and GFF3345 are separated by 26 nucleotidesGFF3345 and GFF3346 overlap by 4 nucleotidesGFF3346 and GFF3347 are separated by 121 nucleotides GFF3343 - D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4), at 166,928 to 168,352 GFF3343 GFF3344 - Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains, at 168,411 to 168,929 GFF3344 GFF3345 - ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), glycolate utilization, at 168,956 to 169,555 GFF3345 GFF3346 - hypothetical protein, at 169,552 to 169,914 GFF3346 GFF3347 - Adenylate cyclase (EC 4.6.1.1), at 170,036 to 170,557 GFF3347
Group Condition GFF3343 GFF3344 GFF3345 GFF3346 GFF3347
complex community Community=Locust bean gum; Passage=4 -0.2 -0.9 -1.1 N.D. +0.6
complex community Community=arabino-guar; Passage=4 -0.2 +0.1 -0.2 N.D. -0.8
complex community Community=guar; Passage=4 -0.2 -0.5 +0.1 N.D. -0.4
phage phage_bap4 -0.1 -0.0 -0.2 N.D. -0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.4 +0.0 N.D. -0.4
complex community Community=arabino-guar; Passage=4 -0.2 +0.4 +0.0 N.D. -1.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.2 -0.0 +0.2 N.D. -0.8
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 -0.4 -0.1 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.1 +0.0 -0.5 N.D. -0.2
vitamin M9 with Supernatant from Cyptococcus +0.1 +0.1 -0.6 N.D. -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.0 -0.1 -0.7 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.0 -0.1 -0.3 N.D. -0.3
vitamin M9 with Supernatant from Cyptococcus -0.2 -0.3 -0.4 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 +0.2 -0.3 N.D. -0.3
complex community Community=guar; Passage=4 +0.2 +0.1 -0.5 N.D. -0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 +0.2 -0.1 N.D. -0.5
complex community Community=Locust bean gum; Passage=1 +0.1 +0.0 +0.1 N.D. -0.5
no phage control no phage control -0.1 +0.1 +0.5 N.D. -0.5
no phage control no phage control +0.2 -0.1 -0.3 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 -0.1 -0.1 N.D. +0.8
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 +0.3 -0.2 N.D. +0.3
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 +0.2 -0.1 N.D. +0.6
complex community Community=arabino-guar; Passage=4 +0.1 +0.2 +0.4 N.D. -0.1
complex community Community=Locust bean gum; Passage=4 +0.0 +0.3 -0.3 N.D. +0.7
complex community Community=Locust bean gum; Passage=4 +0.3 +0.8 -0.1 N.D. -0.2
phage phage_bap4 -0.0 +0.1 +0.8 N.D. +0.0
complex community Community=Locust bean gum; Passage=4 -0.0 -0.3 +0.4 N.D. +0.8
complex community Community=guar; Passage=4 +0.1 -0.0 +0.5 N.D. +0.5
complex community Community=guar; Passage=4 -0.0 +0.0 +0.6 N.D. +0.5
vitamin M9 with Supernatant from Cyptococcus -0.0 -0.1 +0.8 N.D. +0.5
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