Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_17080	PS417_17085	PS417_17090	PS417_17095	PS417_17100
soil	soil sample 5; outgrowth in LB	-0.6	-0.3	N.D.	-2.4	-0.3
phage	P. simiae ORA MOI 1	+0.1	+0.2	N.D.	-0.7	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	-0.2	N.D.	-0.7	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.1	+0.2	N.D.	+0.1	-0.9
solid stress	Fraxetin 3 mM; solid stress	+0.3	+0.1	N.D.	-0.6	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.0	N.D.	-0.4	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.5	-0.1	N.D.	+0.5	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.1	N.D.	-0.7	+0.2
phage	P. simiae OR Antrim MOI 10	+0.3	+0.1	N.D.	-0.9	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.0	+0.2	N.D.	+0.5	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+0.3	N.D.	+0.2	-0.7
carbon source	2'-Deoxyinosine 5 mM (C)	-0.2	-0.2	N.D.	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+0.4	N.D.	-0.4	+0.9
phage	P. simiae Grant Run MOI 10	-0.0	+0.1	N.D.	+1.0	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	-0.1	N.D.	+1.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.5	+0.1	N.D.	-0.3	+0.5
phage	P. simiae Grant Run MOI 0.1	-0.2	-0.1	N.D.	+0.9	+0.3
stress	Gentamicin 0.008 mg/ml	+0.1	+0.3	N.D.	+0.8	-0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	+0.7	N.D.	-0.3	+0.3
phage	P. simiae OR1 MOI 0.1	-0.3	+0.1	N.D.	+1.3	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.0	+0.1	N.D.	+0.4	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.0	N.D.	+0.8	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.4	N.D.	+0.3	+0.7
phage	P. simiae OR Antrim MOI 1	+0.2	+0.2	N.D.	+0.6	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2	+0.1	N.D.	+0.9	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.4	N.D.	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	+0.2	N.D.	+0.1	+0.9
stress	R2A with Fusaric 120 ug/mL	+0.2	+0.2	N.D.	+1.0	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.1	N.D.	+0.1	+1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.5	N.D.	+0.3	+1.0