Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3336 and GFF3337 are separated by 38 nucleotidesGFF3337 and GFF3338 are separated by 139 nucleotidesGFF3338 and GFF3339 are separated by 15 nucleotidesGFF3339 and GFF3340 are separated by 16 nucleotides GFF3336 - tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmG, at 159,998 to 161,947 GFF3336 GFF3337 - 16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170), at 161,986 to 162,585 GFF3337 GFF3338 - Threonine efflux protein, at 162,725 to 163,339 GFF3338 GFF3339 - Chromosome (plasmid) partitioning protein ParA, at 163,355 to 164,275 GFF3339 GFF3340 - FIG00932469: hypothetical protein, at 164,292 to 164,837 GFF3340
Group Condition GFF3336 GFF3337 GFF3338 GFF3339 GFF3340
complex community Community=guar; Passage=4 N.D. -0.9 -0.4 N.D. -1.6
complex community Community=arabino-guar; Passage=4 N.D. -0.5 -0.3 N.D. -1.0
complex community Community=Locust bean gum; Passage=4 N.D. +0.0 -0.1 N.D. -1.2
complex community Community=guar; Passage=4 N.D. -0.6 -0.3 N.D. -0.3
complex community Community=Locust bean gum; Passage=4 N.D. -0.1 -0.2 N.D. -0.7
complex community Community=guar; Passage=4 N.D. -0.0 -0.3 N.D. -0.6
complex community Community=arabino-guar; Passage=4 N.D. -0.1 -0.6 N.D. -0.1
complex community Community=Locust bean gum; Passage=4 N.D. -0.1 +0.0 N.D. -0.7
phage phage_bap4 N.D. -0.4 -0.1 N.D. -0.2
vitamin M9 with Supernatant from Cyptococcus N.D. -0.5 -0.1 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.1 -0.1 N.D. -0.3
no phage control no phage control N.D. -0.3 -0.2 N.D. -0.1
phage phage_bap4 N.D. -0.4 -0.0 N.D. -0.2
no phage control no phage control N.D. -0.3 -0.2 N.D. -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. -0.1 -0.0 N.D. -0.4
complex community Community=Locust bean gum; Passage=1 N.D. -0.1 -0.0 N.D. -0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. -0.2 +0.0 N.D. -0.3
complex community Community=arabino-guar; Passage=4 N.D. -0.1 -0.6 N.D. +0.2
phage phage_bap4 N.D. -0.4 -0.1 N.D. +0.1
complex community Community=Kojac gum; Passage=1 N.D. -0.0 +0.1 N.D. -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.0 +0.1 N.D. -0.4
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. -0.1 +0.1 N.D. -0.4
phage phage_bap4 N.D. -0.4 -0.1 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.0 +0.1 N.D. -0.4
vitamin M9 with Supernatant from Cyptococcus N.D. -0.4 +0.1 N.D. +0.0
complex community Community=guar; Passage=4 N.D. -0.4 +0.0 N.D. +0.2
no phage control no phage control N.D. -0.3 -0.0 N.D. +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. -0.2 -0.0 N.D. +0.3
phage phage_bap4 N.D. -0.2 +0.0 N.D. +0.4
complex community Community=Locust bean gum; Passage=4 N.D. +0.0 -0.2 N.D. +0.7
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