Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_17030	PS417_17035	PS417_17040	PS417_17045	PS417_17050
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-1.9	-0.2	-0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.5	-0.1	-0.5	+0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-1.9	-0.6	-0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.1	-0.3	-0.5	-0.2
seeds	Growth on radish seeds for 72 hours	N.D.	-1.4	-0.8	+0.2	+0.2
stress	methylglyoxal 0.032 vol%	N.D.	-0.7	-0.9	+0.2	-0.4
solid stress	Fraxetin 0.5 mM; solid stress	N.D.	-2.1	+0.1	-0.0	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-1.7	-0.0	+0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.5	-1.2	-0.1	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	-1.1	+0.4	-0.1	-0.6
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-1.1	+0.6	-0.1	-0.6
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-1.5	-0.2	+0.2	+0.3
phage	JP1 MOI 1	N.D.	-0.6	-0.3	-0.6	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.3	+0.6	+0.3	-0.2
stress	Phosphomycin 0.001 mg/ml	N.D.	-1.2	-0.0	-0.0	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.9	+0.3	-0.5	+0.7
carbon source	L-Valine (C)	N.D.	+0.8	+0.2	-0.0	-1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-1.3	-0.1	+0.2	+0.9
root	root sample 6; outgrowth in LB	N.D.	-1.7	+0.6	+0.9	-0.0
soil	soil sample 4; outgrowth in LB	N.D.	-1.3	+0.4	+0.4	+0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	-1.2	-0.1	+1.0	+0.3
soil	soil sample 2; outgrowth in LB	N.D.	-1.2	+0.6	+0.5	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+1.2	-0.2	-0.0	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-0.4	+1.4	+0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.3	-0.3	-0.1	+1.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.5	+0.3	+0.4	+1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.1	-0.3	+0.2	+1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.0	-0.1	+0.2	+1.7
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	+0.8	+0.5	+0.7	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+2.7	-0.2	-0.3	+0.1