Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_17025	PS417_17030	PS417_17035	PS417_17040	PS417_17045
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-2.5	-0.1	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	N.D.	-1.9	-0.6	-0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	-1.9	-0.2	-0.1
solid stress	Fraxetin 0.5 mM; solid stress	N.D.	N.D.	-2.1	+0.1	-0.0
seeds	Growth on radish seeds for 72 hours	N.D.	N.D.	-1.4	-0.8	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.5	-1.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-1.1	-0.3	-0.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-1.5	-0.2	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-1.7	-0.0	+0.3
stress	methylglyoxal 0.032 vol%	N.D.	N.D.	-0.7	-0.9	+0.2
solid stress	Fraxetin 3 mM; solid stress	N.D.	N.D.	-0.9	-0.6	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	-1.4	+0.2	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	-1.3	-0.1	+0.2
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	N.D.	N.D.	-1.3	+0.2	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	-0.9	+0.3	-0.5
stress	6-methoxy-2(3H)-benzoxazolone 2.5 mM	N.D.	N.D.	-1.2	+0.3	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	N.D.	-1.1	+0.4	-0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-1.1	+0.6	-0.1
carbon source	Carbon source D-Mannitol 2.5 mM	N.D.	N.D.	-1.1	+0.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-1.3	+0.6	+0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	N.D.	-1.2	-0.1	+1.0
soil	soil sample 4; outgrowth in LB	N.D.	N.D.	-1.3	+0.4	+0.4
soil	soil sample 3; outgrowth in LB	N.D.	N.D.	-1.0	+0.5	+0.3
root	root sample 6; outgrowth in LB	N.D.	N.D.	-1.7	+0.6	+0.9
soil	soil sample 2; outgrowth in LB	N.D.	N.D.	-1.2	+0.6	+0.5
soil	soil sample 5; outgrowth in LB	N.D.	N.D.	-0.7	+0.5	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	-0.4	+1.0	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	-0.4	+1.4	+0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	N.D.	+0.8	+0.5	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	N.D.	+2.7	-0.2	-0.3