Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_16975 and PS417_16980 are separated by 168 nucleotidesPS417_16980 and PS417_16985 are separated by 188 nucleotidesPS417_16985 and PS417_16990 are separated by 130 nucleotidesPS417_16990 and PS417_16995 are separated by 151 nucleotides PS417_16975: PS417_16975 - GNAT family acetyltransferase, at 3,708,117 to 3,708,767 _16975 PS417_16980: PS417_16980 - exonuclease III, at 3,708,936 to 3,709,748 _16980 PS417_16985: PS417_16985 - membrane protein, at 3,709,937 to 3,711,268 _16985 PS417_16990: PS417_16990 - acyl-CoA dehydrogenase, at 3,711,399 to 3,712,628 _16990 PS417_16995: PS417_16995 - LysR family transcriptional regulator, at 3,712,780 to 3,713,715 _16995
Group Condition PS417_16975 PS417_16980 PS417_16985 PS417_16990 PS417_16995
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 +0.1 -0.2 -5.9 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 +0.0 -0.2 -4.8 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 +0.6 -0.0 -5.5 +0.3
soil soil sample 5; outgrowth in LB +0.1 -0.1 -0.1 -4.9 -0.1
root root sample 6; outgrowth in LB -0.3 -1.0 -0.4 -3.1 +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 -0.9 -0.4 -3.2 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +0.0 +0.0 -4.0 -0.4
soil soil sample 4; outgrowth in LB +0.2 -0.8 +0.2 -4.0 +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 -0.6 +0.7 -4.3 +0.2
soil soil sample 6; outgrowth in LB -0.5 -0.1 +0.3 -3.7 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 -0.2 +0.2 -3.4 -0.5
soil soil sample 2; outgrowth in LB +0.1 -0.5 +0.1 -3.2 +0.3
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.1 +0.1 +0.3 -4.1 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 +0.1 +0.0 -2.8 +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.5 +0.6 -4.6 +0.1
carbon source Gly-Glu (C) +0.3 -0.4 +0.3 -2.9 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 +0.2 +0.4 -2.1 +0.2
seeds Growth on radish seeds for 72 hours +0.5 -0.1 -0.4 -2.7 +0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.0 +0.3 -3.3 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.1 +0.3 -2.8 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.4 +0.4 -2.3 -1.1
soil soil sample 3; outgrowth in LB +0.6 -0.1 -0.2 -2.7 +0.0
carbon source 2'-Deoxyinosine 5 mM (C) -1.0 +0.4 -0.1 -2.0 +0.4
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +0.2 -0.1 -2.4 -0.5
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.2 +0.5 +0.5 -3.7 +0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.3 -0.1 -2.9 +0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 -0.2 +1.6 -4.3 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +0.3 +0.4 -2.6 +0.1
seeds Growth on radish seeds for 72 hours +0.2 -0.9 +0.9 -1.5 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.1 +1.9 +0.3 -1.4 +0.2
remove
PS417_16975
plot		 remove
PS417_16980
plot		 remove
PS417_16985		 remove
PS417_16990
plot		 remove
PS417_16995
plot