Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3312 and GFF3313 overlap by 4 nucleotidesGFF3313 and GFF3314 are separated by 577 nucleotidesGFF3314 and GFF3315 are separated by 109 nucleotidesGFF3315 and GFF3316 overlap by 4 nucleotides GFF3312 - Sensory histidine kinase CreC of two-component signal transduction system CreBC, at 138,698 to 140,149 GFF3312 GFF3313 - Response regulator CreB of two-component signal transduction system CreBC, at 140,146 to 140,940 GFF3313 GFF3314 - FIG00349255: hypothetical protein, at 141,518 to 142,477 GFF3314 GFF3315 - Cu(I)-responsive transcriptional regulator, at 142,587 to 142,985 GFF3315 GFF3316 - Copper(I) chaperone CopZ, at 142,982 to 143,179 GFF3316
Group Condition GFF3312 GFF3313 GFF3314 GFF3315 GFF3316
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 -0.3 -0.2 -0.2 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.1 -0.1 -0.3 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 -0.2 -0.1 -0.3 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 -0.0 -0.1 -0.2 N.D.
complex community Community=Locust bean gum; Passage=4 -0.1 -0.1 +0.1 -0.4 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.0 -0.1 -0.1 -0.4 N.D.
phage phage_bap4 -0.1 -0.2 -0.2 -0.0 N.D.
complex community Community=guar; Passage=4 -0.0 -0.5 +0.3 -0.2 N.D.
phage phage_bap4 -0.1 -0.1 -0.2 -0.0 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.0 -0.1 -0.1 -0.2 N.D.
no phage control no phage control -0.1 -0.1 -0.2 -0.1 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 -0.1 -0.2 -0.1 N.D.
complex community Community=arabino-guar; Passage=4 -0.1 -0.1 +0.0 -0.2 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.1 -0.1 +0.0 -0.2 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 -0.0 -0.1 -0.2 N.D.
complex community Community=Kojac gum; Passage=1 +0.1 +0.0 -0.1 -0.2 N.D.
complex community Community=arabino-guar; Passage=4 -0.1 -0.2 -0.2 +0.3 N.D.
phage phage_bap4 -0.1 -0.2 -0.0 +0.1 N.D.
complex community Community=guar; Passage=4 -0.0 +0.2 +0.0 -0.3 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.0 +0.1 -0.0 -0.2 N.D.
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 -0.0 -0.1 -0.2 N.D.
complex community Community=Kojac gum; Passage=4 -0.1 +0.1 -0.2 +0.2 N.D.
vitamin M9 with Supernatant from Cyptococcus +0.0 +0.2 +0.1 -0.2 N.D.
complex community Community=guar; Passage=4 -0.0 +0.3 +0.0 -0.1 N.D.
vitamin M9 with Supernatant from Cyptococcus +0.2 +0.1 -0.0 -0.1 N.D.
complex community Community=Locust bean gum; Passage=4 +0.3 +0.5 +0.2 -0.6 N.D.
phage phage_bap4 +0.2 +0.1 -0.1 +0.2 N.D.
complex community Community=Locust bean gum; Passage=4 +0.1 +0.5 -0.1 -0.1 N.D.
complex community Community=guar; Passage=4 -0.0 +0.3 +0.2 -0.0 N.D.
complex community Community=arabino-guar; Passage=4 +0.2 +0.2 +0.2 +0.1 N.D.
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