Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16945	PS417_16950	PS417_16955	PS417_16960	PS417_16965
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	+0.7	+0.2	-0.0	-1.8
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.9	+0.4	-0.4	-0.2	-0.9
phage	P. simiae OR Antrim MOI 1	+1.0	-2.4	-0.0	-0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	-0.4	-0.2	-0.2	+0.1
carbon source	L-Valine (C)	+0.2	-0.6	-0.6	+0.1	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.6	+0.3	-0.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	-0.6	+0.1	+0.1	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.3	-0.0	+0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-1.2	+0.3	-0.0	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.6	+0.1	+0.1	-0.1	+0.4
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.1	-0.7	-0.2	+0.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.3	-0.2	+0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.5	+0.2	-0.3	-0.7
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	+0.2	-0.5	-0.4	-0.2	+0.5
phage	JP1 MOI 1	+0.0	-1.1	-0.0	-0.0	+0.7
phage	P. simiae Grant Run MOI 0.1	+0.8	-0.6	-0.1	+0.2	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.5	-0.2	+0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.5	+0.3	+0.1	-0.5
phage	P. simiae ORA MOI 0.1	+0.8	-1.1	+0.1	+0.2	-0.4
seeds	Growth on radish seeds for 72 hours	-0.0	+0.9	-0.6	+0.4	-0.7
stress	LB_noSalt with Chloride 500 mM	+0.9	+0.1	-0.3	-0.2	-0.4
soil	soil sample 5; outgrowth in LB	+0.6	-0.6	-0.3	+0.2	+0.3
solid stress	Fraxetin 3 mM; solid stress	+0.5	-0.4	-0.4	+0.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.9	-0.9	+0.4	-0.1	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2	+1.4	-0.1	-0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	-0.3	+1.1	-0.0	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.9	-0.1	-0.1	+0.5
stress	1-ethyl-3-methylimidazolium chloride 200 mM	+0.9	+0.3	+0.5	-0.3	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	+0.2	+1.1	+0.4	-0.0
seeds	Growth on radish seeds for 24 hours	+0.7	+1.6	+0.3	+0.1	+0.1