Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16930	PS417_16935	PS417_16940	PS417_16945	PS417_16950
phage	P. simiae OR1 MOI 0.1	-0.3	-0.8	+0.2	-0.3	-0.7
soil	soil sample 7; outgrowth in LB	+0.3	-1.0	+0.0	-0.8	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.3	+0.0	-0.6	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.2	+0.2	-1.6	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.3	+0.4	-1.2	-0.6
soil	soil sample 4; outgrowth in LB	+0.2	-0.7	+0.2	-0.7	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.0	+0.0	-0.3	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-0.4	+0.1	-0.7	+0.1
motility	inner cut, LB soft agar motility assay	-0.4	-0.5	-0.0	-0.6	+0.4
phage	P. simiae OR Antrim MOI 1	+0.3	-0.2	+0.2	+1.0	-2.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	-0.2	+0.1	-0.9	+0.4
phage	P. simiae Grant Run MOI 10	-0.1	-0.2	-0.3	+0.7	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.3	+0.1	-0.9	+0.5
phage	P. simiae ORA MOI 0.1	+0.1	-0.3	-0.0	+0.8	-1.1
seeds	Growth on radish seeds for 72 hours	+0.0	-0.9	-0.2	+0.6	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.0	-0.0	-1.2	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.7	-0.5	+0.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	+0.5	-0.1	-0.6	+0.4
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.0	+0.6	-0.1	+0.3	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.0	+0.3	-0.1	+0.8	-0.6
supernatant control	Vogels_fungal_media; pH 5.5	-0.3	-0.4	-0.1	+0.5	+0.8
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.2	+0.3	-0.4	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.4	+0.2	+0.2	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.6	+0.4	+0.2	+0.9	-0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	+0.6	+0.4	+0.7	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.8	+0.8	+0.2	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	-0.0	+0.2	-0.2	+1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+1.1	+0.3	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8	+0.5	-0.1	+0.3	+0.2
seeds	Growth on radish seeds for 24 hours	+0.0	-0.1	-0.3	+0.7	+1.6