Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_01675 and PS417_01680 are separated by 200 nucleotidesPS417_01680 and PS417_01685 overlap by 1 nucleotidesPS417_01685 and PS417_01690 are separated by 108 nucleotidesPS417_01690 and PS417_01695 are separated by 176 nucleotides PS417_01675: PS417_01675 - maltodextrin phosphorylase, at 368,200 to 370,650 _01675 PS417_01680: PS417_01680 - membrane protein, at 370,851 to 373,922 _01680 PS417_01685: PS417_01685 - membrane protein, at 373,922 to 375,277 _01685 PS417_01690: PS417_01690 - fructose 1,6-bisphosphatase, at 375,386 to 376,396 _01690 PS417_01695: PS417_01695 - hypothetical protein, at 376,573 to 376,827 _01695
Group Condition PS417_01675 PS417_01680 PS417_01685 PS417_01690 PS417_01695
phage P. simiae OR Antrim MOI 10 +0.0 -0.2 -1.1 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -0.2 -0.4 N.D. N.D.
phage P. simiae Grant Run MOI 0.1 -0.0 -0.1 -1.0 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 +0.0 -0.5 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.0 -0.1 -1.0 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.2 -0.9 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +0.1 -0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -0.2 +0.3 N.D. N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -0.3 +0.3 -0.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.2 -0.1 +0.8 N.D. N.D.
stress Gentamicin 0.008 mg/ml +0.6 +0.2 -1.0 N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -0.6 +0.1 +0.7 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +0.3 +0.3 N.D. N.D.
seeds Growth on radish seeds for 72 hours -0.3 -0.2 +0.9 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 +0.1 +0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +0.3 +0.5 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.1 +0.8 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.3 +0.1 +0.7 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +0.4 +0.4 N.D. N.D.
carbon source L-Citrulline (C) -0.2 -0.0 +0.9 N.D. N.D.
phage P. simiae OR Antrim MOI 10 +0.4 -0.2 +0.4 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +0.1 +0.8 N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -0.4 +0.1 +1.1 N.D. N.D.
phage P. simiae OR1 MOI 0.1 +0.3 -0.4 +1.0 N.D. N.D.
stress Thallium(I) acetate 0.0625 mg/ml +0.3 +0.3 +0.4 N.D. N.D.
seeds Growth on radish seeds for 72 hours +0.4 +0.1 +0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -0.1 +1.3 N.D. N.D.
seeds Growth on radish seeds for 24 hours +0.2 +0.2 +0.8 N.D. N.D.
stress 1-ethyl-3-methylimidazolium chloride 200 mM -0.0 +0.1 +1.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 +0.0 +2.1 N.D. N.D.
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