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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3306 and GFF3307 are separated by 19 nucleotides
GFF3307 and GFF3308 are separated by 176 nucleotides
GFF3308 and GFF3309 overlap by 4 nucleotides
GFF3309 and GFF3310 are separated by 20 nucleotides
GFF3306 - hypothetical protein, at 129,605 to 130,534
GFF3306
GFF3307 - FIG01161751: hypothetical protein, at 130,554 to 132,650
GFF3307
GFF3308 - Inner membrane protein CreD, at 132,827 to 134,290
GFF3308
GFF3309 - Beta-hexosaminidase (EC 3.2.1.52), at 134,287 to 135,579
GFF3309
GFF3310 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 135,600 to 138,002
GFF3310
Group
Condition
GFF3306
GFF3307
GFF3308
GFF3309
GFF3310
complex community
Community=arabino-guar; Passage=4
-0.6
-0.2
-0.0
-0.9
+0.2
complex community
Community=arabino-guar; Passage=4
+0.5
-0.0
-0.0
-1.9
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-0.1
-0.3
-0.4
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
-0.1
-0.2
-0.5
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.3
-0.3
-0.0
-0.0
complex community
Community=guar; Passage=4
+0.0
+0.3
-0.3
-0.6
-0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.5
+0.1
-0.1
+0.0
-0.0
no phage control
no phage control
-0.4
+0.2
-0.2
-0.1
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
-0.1
-0.4
-0.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
-0.2
-0.2
+0.2
+0.1
phage
phage_bap4
-0.3
-0.0
-0.1
+0.2
-0.1
complex community
Community=Locust bean gum; Passage=4
+0.2
-0.2
-0.1
-0.3
+0.1
complex community
Community=guar; Passage=4
-0.4
-0.0
+0.1
+0.2
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.2
-0.2
-0.3
+0.2
-0.0
complex community
Community=arabino-guar; Passage=4
+0.2
-0.1
-0.2
-0.1
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.0
+0.2
+0.2
-0.3
-0.0
complex community
Community=Kojac gum; Passage=4
+0.5
+0.1
+0.1
-0.5
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.3
-0.1
-0.2
+0.0
+0.1
phage
phage_bap4
+0.2
+0.1
-0.1
+0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
-0.2
-0.2
+0.3
+0.1
phage
phage_bap4
-0.2
+0.3
-0.0
+0.2
-0.0
complex community
Community=guar; Passage=4
-0.2
+0.1
-0.3
+0.5
+0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.2
-0.1
-0.1
+0.3
+0.1
phage
phage_bap4
+0.0
+0.3
+0.1
-0.2
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.2
+0.4
+0.2
-0.5
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.5
+0.0
-0.3
+0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
-0.1
+0.0
+0.4
+0.0
complex community
Community=guar; Passage=4
+0.3
+0.2
+0.1
+0.2
+0.1
complex community
Community=arabino-guar; Passage=4
+0.9
+0.3
-0.4
+0.3
-0.0
complex community
Community=Locust bean gum; Passage=4
+0.6
+0.3
+0.1
+0.2
+0.1
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