Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16910	PS417_16915	PS417_16920	PS417_16925	PS417_16930
stress	R2A with Fusaric 120 ug/mL	-1.9	-2.6	-2.3	N.D.	-0.0
stress	R2A with Fusaric 120 ug/mL	-2.1	-2.3	-2.1	N.D.	+0.0
stress	R2A with Fusaric 120 ug/mL	-2.4	-1.6	-2.3	N.D.	-0.1
stress	R2A with Fusaric 120 ug/mL	-1.8	-1.9	-2.5	N.D.	+0.1
stress	R2A with Fusaric 120 ug/mL	-2.0	-2.1	-2.1	N.D.	+0.1
stress	R2A with Fusaric 120 ug/mL	-2.1	-2.0	-1.9	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.3	-1.9	N.D.	-0.2
solid stress	Fraxetin 2 mM; solid stress	-0.8	-1.0	-0.4	N.D.	-0.0
solid stress	Fraxetin 3 mM; solid stress	-0.6	-0.0	-1.5	N.D.	+0.0
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-0.7	-1.3	-0.1	N.D.	+0.2
stress	Doxycycline hyclate 0.001 mg/ml	-0.4	+0.1	-1.3	N.D.	-0.1
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-0.3	-0.8	-0.5	N.D.	-0.0
solid stress	Fraxetin 3 mM; solid stress	-0.6	-0.7	-0.2	N.D.	-0.2
solid stress	Fraxetin 3 mM; solid stress	-0.6	-0.4	-0.6	N.D.	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.2	-0.7	N.D.	-0.4
carbon source	L-Valine (C)	-0.1	-1.3	-0.2	N.D.	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.8	-0.1	+0.3	N.D.	-0.3
stress	1-ethyl-3-methylimidazolium chloride 200 mM	-0.7	+0.5	-0.4	N.D.	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.4	+0.5	N.D.	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.6	-0.4	N.D.	-0.0
phage	P. simiae ORA MOI 0.1	+0.4	+0.4	-0.8	N.D.	+0.1
seeds	Growth on radish seeds for 72 hours	+0.8	-0.6	-0.0	N.D.	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.1	+0.3	-0.5	N.D.	-0.3
phage	P. simiae Grant Run MOI 0.1	+0.5	+0.4	-0.4	N.D.	+0.1
stress	methylglyoxal 0.032 vol%	+0.4	-0.5	+1.1	N.D.	-0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.0	-0.2	-0.0	N.D.	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.5	+0.4	+0.5	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.5	+0.2	N.D.	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.2	+1.3	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	+0.3	+0.9	N.D.	+0.1