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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3300 and GFF3301 overlap by 4 nucleotides
GFF3301 and GFF3302 are separated by 129 nucleotides
GFF3302 and GFF3303 overlap by 4 nucleotides
GFF3303 and GFF3304 overlap by 4 nucleotides
GFF3300 - hypothetical protein, at 124,265 to 124,822
GFF3300
GFF3301 - Lignostilbene-alpha,beta-dioxygenase and related enzymes, at 124,819 to 126,246
GFF3301
GFF3302 - no description, at 126,376 to 127,017
GFF3302
GFF3303 - Acetyltransferase, GNAT family, at 127,014 to 127,778
GFF3303
GFF3304 - Monofunctional biosynthetic peptidoglycan transglycosylase, at 127,775 to 129,043
GFF3304
Group
Condition
GFF3300
GFF3301
GFF3302
GFF3303
GFF3304
complex community
Community=arabino-guar; Passage=4
-0.3
-0.2
-0.7
-0.9
-0.6
complex community
Community=Locust bean gum; Passage=4
+0.2
-0.1
-1.2
-0.9
-0.1
complex community
Community=arabino-guar; Passage=4
-0.5
+0.1
-0.9
-0.4
-0.2
complex community
Community=guar; Passage=4
-0.0
-0.4
-0.5
-0.7
+0.1
complex community
Community=Kojac gum; Passage=4
+0.2
-0.3
-0.7
-0.5
+0.0
complex community
Community=Locust bean gum; Passage=4
+0.6
-0.0
-0.9
-0.1
-0.8
complex community
Community=guar; Passage=4
+0.1
+0.2
-0.8
-0.5
+0.1
no phage control
no phage control
-0.2
-0.0
-0.1
-0.6
-0.0
no phage control
no phage control
+0.0
-0.1
-0.2
-0.4
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
-0.1
-0.3
-0.3
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
+0.1
-0.3
-0.4
-0.1
phage
phage_bap4
-0.2
-0.0
-0.3
-0.1
-0.1
complex community
Community=Locust bean gum; Passage=4
-0.0
-0.1
-0.3
-0.3
-0.1
phage
phage_bap4
-0.1
+0.0
-0.0
-0.5
-0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.0
-0.3
-0.3
-0.1
no phage control
no phage control
-0.0
-0.1
-0.1
-0.5
-0.0
complex community
Community=arabino-guar; Passage=4
+0.7
-0.2
-0.9
-0.6
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.3
+0.0
-0.2
-0.1
-0.1
complex community
Community=arabino-guar; Passage=4
+0.5
-0.0
-0.7
-0.4
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-0.1
-0.5
-0.1
+0.2
complex community
Community=guar; Passage=4
-0.1
-0.1
-0.5
+0.2
-0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.1
+0.1
-0.2
-0.5
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
+0.1
+0.2
-0.5
-0.0
complex community
Community=Locust bean gum; Passage=4
+1.0
-0.0
-1.2
-0.0
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.1
-0.2
+0.3
-0.1
phage
phage_bap4
+0.3
+0.1
+0.1
-0.3
-0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.0
+0.0
-0.3
+0.4
-0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.0
-0.0
-0.3
+0.3
+0.1
complex community
Community=guar; Passage=4
+0.5
+0.2
-0.4
+0.5
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.3
+0.0
+0.1
+0.1
+0.3
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