Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_16860 and PS417_16865 are separated by 101 nucleotidesPS417_16865 and PS417_16870 overlap by 4 nucleotidesPS417_16870 and PS417_16875 are separated by 192 nucleotidesPS417_16875 and PS417_16880 are separated by 112 nucleotides PS417_16860: PS417_16860 - diadenosine tetraphosphate hydrolase, at 3,676,780 to 3,677,238 _16860 PS417_16865: PS417_16865 - HxlR family transcriptional regulator, at 3,677,340 to 3,677,669 _16865 PS417_16870: PS417_16870 - short-chain dehydrogenase, at 3,677,666 to 3,678,448 _16870 PS417_16875: PS417_16875 - signal peptidase, at 3,678,641 to 3,679,309 _16875 PS417_16880: PS417_16880 - deaminase/reductase, at 3,679,422 to 3,679,985 _16880
Group Condition PS417_16860 PS417_16865 PS417_16870 PS417_16875 PS417_16880
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.2 N.D. -1.6 +0.2 +0.0
seeds Growth on radish seeds for 72 hours -0.2 N.D. -0.2 -1.1 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 N.D. -0.8 +0.4 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.3 N.D. -0.1 -1.0 +0.2
carbon source L-Valine (C) +0.1 N.D. -1.3 +0.0 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 N.D. -0.9 -0.2 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 N.D. -0.1 -0.5 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 N.D. -0.6 -1.0 +0.0
phage JP1 MOI 1 -0.5 N.D. +0.3 -0.8 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 N.D. +0.3 -1.0 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 N.D. +0.5 -0.4 -0.6
seeds Growth on radish seeds for 24 hours +0.7 N.D. -0.6 -0.6 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 N.D. +0.4 -0.5 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 N.D. +0.6 -0.4 -0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.8 N.D. -0.6 +0.8 +0.3
stress Gentamicin 0.008 mg/ml +0.6 N.D. +0.2 -0.5 -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 N.D. +0.8 -0.7 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 N.D. +0.9 -0.7 -0.3
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.5 N.D. +0.4 -0.3 -0.4
soil soil sample 5; outgrowth in LB +0.9 N.D. -0.0 -0.8 +0.2
agar plate interaction control Taped volatile agar plate with no fungus -0.4 N.D. +0.8 -0.5 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 N.D. +0.6 +0.9 -0.2
root root sample 6; outgrowth in LB +1.2 N.D. -0.3 +0.2 -0.1
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +1.0 N.D. +0.7 -0.4 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.1 N.D. +1.3 +0.1 -0.2
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.7 N.D. +0.5 +0.2 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 N.D. +1.1 +0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 N.D. +0.9 +0.3 +0.2
stress Choline chloride 300 mM +0.1 N.D. +0.8 +0.4 +0.5
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 N.D. +0.9 +0.4 -0.1
remove
PS417_16860
plot		 remove
PS417_16865
plot		 remove
PS417_16870		 remove
PS417_16875
plot		 remove
PS417_16880
plot