Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16835	PS417_16840	PS417_16845	PS417_16850	PS417_16855
stress	L-Lysine 60 mM	N.D.	-3.3	-4.5	-2.5	-1.7
stress	Choline Lysine 25 mM	N.D.	-2.6	-2.8	-3.1	-0.9
seeds	Growth on radish seeds for 72 hours	N.D.	-0.2	-0.9	-0.5	-1.0
seeds	Growth on radish seeds for 72 hours	N.D.	-0.3	-1.3	-0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.1	-0.3	-0.2	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.1	-0.5	-0.3	-1.3
soil	soil sample 4; outgrowth in LB	N.D.	-0.5	-0.5	+0.3	-1.0
phage	P. simiae Grant Run MOI 0.1	N.D.	+0.1	+0.3	-0.4	-1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.5	+0.8	-0.4	-2.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-0.4	+0.7	-1.3
phage	P. simiae OR Antrim MOI 1	N.D.	+0.3	+0.5	-0.2	-1.9
supernatant control	Vogels_fungal_media 0.1X	N.D.	+0.1	+0.6	-0.1	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	+0.5	-0.9	-0.9
stress	Doxycycline hyclate 0.001 mg/ml	N.D.	+0.2	-0.5	+0.6	-1.4
soil	soil sample 7; outgrowth in LB	N.D.	+0.1	+0.5	-0.7	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.9	-0.8	+0.3	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.1	-0.3	+1.4	-1.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.4	+1.5	-0.8	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	+0.7	+0.4	-1.2
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	+0.4	-0.7	-0.3	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	-0.5	-0.4	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.2	+0.6	-0.8	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-0.3	-0.9	+0.2	+1.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.4	+0.4	+1.0	-0.6
stress	methylglyoxal 0.032 vol%	N.D.	+0.2	-0.6	+0.5	+1.2
carbon source	L-Valine (C)	N.D.	-0.0	-0.5	+0.7	+1.0
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-0.2	+0.5	+1.0	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.1	-0.1	-0.1	+1.8
seeds	Growth on radish seeds for 72 hours	N.D.	-0.4	+0.7	+0.9	+0.7
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	+1.1	+0.6	+1.1	+0.6