Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16825	PS417_16830	PS417_16835	PS417_16840	PS417_16845
stress	L-Lysine 60 mM	+0.0	-3.3	N.D.	-3.3	-4.5
stress	Choline Lysine 25 mM	-0.1	-2.7	N.D.	-2.6	-2.8
seeds	Growth on radish seeds for 72 hours	-0.7	-0.2	N.D.	-0.3	-1.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6	-0.2	N.D.	-0.2	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.6	+0.1	N.D.	-0.4	-0.0
phage	P. simiae Grant Run MOI 0.1	-1.7	-0.0	N.D.	+0.1	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-tyrosine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.2	-0.1	N.D.	+0.1	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.4	N.D.	-0.6	+0.7
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+1.0	-0.2	N.D.	-0.3	-0.6
carbon source	2'-Deoxyinosine 5 mM (C)	+0.9	+0.0	N.D.	+0.4	-0.7
soil	soil sample 4; outgrowth in LB	+2.1	-0.1	N.D.	-0.5	-0.5
soil	soil sample 8; outgrowth in LB	+1.5	-0.1	N.D.	+0.3	-0.6
soil	soil sample 2; outgrowth in LB	+1.1	-0.0	N.D.	+0.4	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.6	+0.2	N.D.	+0.1	-0.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	+2.6	-0.1	N.D.	-0.1	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.5	-0.1	N.D.	+0.9	-0.8
soil	soil sample 5; outgrowth in LB	+1.5	-0.1	N.D.	+0.3	-0.0
soil	soil sample 3; outgrowth in LB	+1.5	-0.1	N.D.	+0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.1	+0.2	N.D.	+0.5	+0.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	+1.7	+0.1	N.D.	-0.4	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.4	+0.2	N.D.	+0.0	+0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	+2.5	+0.0	N.D.	-0.1	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.4	N.D.	+0.5	+0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	+0.1	N.D.	+0.4	+1.5
soil	soil sample 6; outgrowth in LB	+2.5	+0.1	N.D.	+0.3	-0.1
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.2	+1.0	N.D.	+1.1	+0.6
stress	Phosphomycin 0.002 mg/ml	+3.5	-0.1	N.D.	-0.0	+0.8
root	root sample 6; outgrowth in LB	+3.0	+0.4	N.D.	-0.0	+1.0
stress	Phosphomycin 0.003 mg/ml	+3.8	+0.2	N.D.	-0.1	+0.7
stress	Phosphomycin 0.001 mg/ml	+4.5	+0.1	N.D.	+0.4	+0.1