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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF3286 and GFF3287 overlap by 20 nucleotides
GFF3287 and GFF3288 overlap by 1 nucleotides
GFF3288 and GFF3289 are separated by 119 nucleotides
GFF3289 and GFF3290 are separated by 66 nucleotides
GFF3286 - Epoxyqueuosine reductase (EC 1.17.99.6) QueG, at 3,340,305 to 3,341,363
GFF3286
GFF3287 - hypothetical protein, at 3,341,344 to 3,341,712
GFF3287
GFF3288 - Uncharacterized integral membrane protein Mlr5338, at 3,341,712 to 3,342,386
GFF3288
GFF3289 - Fructokinase (EC 2.7.1.4), at 3,342,506 to 3,343,504
GFF3289
GFF3290 - Membrane protein, at 3,343,571 to 3,345,103
GFF3290
Group
Condition
GFF3286
GFF3287
GFF3288
GFF3289
GFF3290
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.4
-0.2
+0.0
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
-0.5
-0.2
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.2
-0.3
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.4
-0.2
+0.0
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.3
-0.2
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.1
-0.2
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.2
+0.1
-0.4
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.2
-0.1
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
-0.5
+0.2
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
-0.1
-0.2
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.1
+0.0
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
-0.2
+0.0
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
+0.1
-0.0
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
-0.0
-0.2
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
+0.1
-0.0
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
-0.1
-0.0
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
+0.0
+0.2
N.D.
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.2
+0.0
N.D.
N.D.
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