Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3281 and GFF3282 are separated by 136 nucleotidesGFF3282 and GFF3283 are separated by 159 nucleotidesGFF3283 and GFF3284 overlap by 1 nucleotidesGFF3284 and GFF3285 overlap by 35 nucleotides GFF3281 - DNA polymerase III beta subunit (EC 2.7.7.7), at 100,788 to 101,894 GFF3281 GFF3282 - DNA gyrase subunit B (EC 5.99.1.3), at 102,031 to 104,640 GFF3282 GFF3283 - ClpB protein, at 104,800 to 108,003 GFF3283 GFF3284 - hypothetical protein, at 108,003 to 111,272 GFF3284 GFF3285 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 111,238 to 113,565 GFF3285
Group Condition GFF3281 GFF3282 GFF3283 GFF3284 GFF3285
phage phage_bap4 N.D. N.D. -0.2 -0.2 -0.2
phage phage_bap4 N.D. N.D. -0.2 -0.1 -0.2
phage phage_bap4 N.D. N.D. -0.2 -0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. N.D. -0.3 +0.0 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. N.D. -0.1 -0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL N.D. N.D. -0.2 -0.0 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. N.D. -0.1 -0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus N.D. N.D. -0.4 +0.3 -0.0
complex community Community=Locust bean gum; Passage=4 N.D. N.D. -0.2 +0.1 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. N.D. -0.0 +0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus N.D. N.D. -0.1 +0.1 -0.1
phage phage_bap4 N.D. N.D. +0.2 -0.0 -0.1
complex community Community=arabino-guar; Passage=4 N.D. N.D. -0.0 -0.1 +0.1
complex community Community=Locust bean gum; Passage=4 N.D. N.D. -0.3 +0.3 -0.0
complex community Community=arabino-guar; Passage=4 N.D. N.D. -0.5 +0.5 +0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. N.D. -0.1 +0.1 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. N.D. -0.1 +0.2 +0.0
complex community Community=Kojac gum; Passage=4 N.D. N.D. -0.1 +0.2 +0.0
complex community Community=guar; Passage=4 N.D. N.D. +0.0 -0.1 +0.2
phage phage_bap4 N.D. N.D. +0.2 +0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. N.D. +0.1 +0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL N.D. N.D. +0.1 +0.2 -0.0
no phage control no phage control N.D. N.D. +0.1 +0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL N.D. N.D. +0.2 +0.1 +0.1
complex community Community=guar; Passage=4 N.D. N.D. +0.1 +0.0 +0.2
complex community Community=Locust bean gum; Passage=4 N.D. N.D. -0.0 +0.2 +0.2
complex community Community=Locust bean gum; Passage=1 N.D. N.D. +0.1 +0.2 +0.1
complex community Community=arabino-guar; Passage=4 N.D. N.D. +0.3 +0.1 +0.1
complex community Community=guar; Passage=4 N.D. N.D. +0.2 +0.1 +0.2
complex community Community=arabino-guar; Passage=4 N.D. N.D. +0.3 +0.2 +0.1
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