Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16710	PS417_16715	PS417_16720	PS417_16725	PS417_16730
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-2.2	-0.9	-0.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-3.2	-0.5	+0.2	N.D.
phage	JP1 MOI 10	-0.1	-2.7	-0.4	-0.2	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	-0.5	-1.6	-1.1	-0.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-1.8	-1.8	+0.4	N.D.
soil	soil sample 4; outgrowth in LB	+0.4	-0.7	-2.4	-0.6	N.D.
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x	-0.3	-2.2	-0.6	-0.0	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.8	-1.8	+0.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-1.4	-1.5	-0.1	N.D.
soil	soil sample 7; outgrowth in LB	+0.2	+0.6	-3.6	-0.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-1.3	-1.2	-0.0	N.D.
supernatant control	Vogels_fungal_media 0.1X	+0.0	-2.3	-0.3	-0.1	N.D.
supernatant control	Vogels_fungal_media 0.1X	+0.4	-0.4	-2.2	-0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.5	-2.2	-0.0	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	-1.4	-0.6	+0.1	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	+0.1	-0.4	-2.3	+0.4	N.D.
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	-0.4	-1.8	+0.6	-0.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	-0.5	-1.5	+0.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	-0.5	-1.6	+0.4	N.D.
phage	P. simiae Grant Run MOI 0.1	-0.5	+0.8	-1.2	-0.3	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	-1.0	+0.3	+0.5	N.D.
phage	P. simiae ORA MOI 0.1	-0.2	-1.6	+0.7	+0.3	N.D.
agar plate interaction control	Taped volatile agar plate with no fungus	-0.8	+1.7	-1.3	-0.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.3	-0.1	-1.5	-0.0	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.0	-1.8	+1.3	+0.3	N.D.
phage	P. simiae ORA MOI 0.1	+0.6	-1.3	+1.1	+0.1	N.D.
carbon source	L-Valine (C)	+0.3	-1.5	+2.0	-0.1	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2	+1.0	+1.9	+0.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	+1.9	+1.0	+0.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.9	+2.7	-0.4	+0.5	N.D.