Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_16705	PS417_16710	PS417_16715	PS417_16720	PS417_16725
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.1	-2.2	-0.9	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.0	-3.2	-0.5	+0.2
phage	JP1 MOI 10	N.D.	-0.1	-2.7	-0.4	-0.2
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-0.5	-1.6	-1.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	-1.8	-1.8	+0.4
soil	soil sample 4; outgrowth in LB	N.D.	+0.4	-0.7	-2.4	-0.6
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x	N.D.	-0.3	-2.2	-0.6	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.5	-0.8	-1.8	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-1.4	-1.5	-0.1
soil	soil sample 7; outgrowth in LB	N.D.	+0.2	+0.6	-3.6	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-1.3	-1.2	-0.0
supernatant control	Vogels_fungal_media 0.1X	N.D.	+0.0	-2.3	-0.3	-0.1
supernatant control	Vogels_fungal_media 0.1X	N.D.	+0.4	-0.4	-2.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.4	-0.5	-2.2	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.5	-1.4	-0.6	+0.1
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	+0.1	-0.4	-2.3	+0.4
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	N.D.	-0.4	-1.8	+0.6	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.3	-0.5	-1.5	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.3	-0.5	-1.6	+0.4
phage	P. simiae Grant Run MOI 0.1	N.D.	-0.5	+0.8	-1.2	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.9	-1.0	+0.3	+0.5
phage	P. simiae ORA MOI 0.1	N.D.	-0.2	-1.6	+0.7	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-0.8	+1.7	-1.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+1.3	-0.1	-1.5	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.0	-1.8	+1.3	+0.3
phage	P. simiae ORA MOI 0.1	N.D.	+0.6	-1.3	+1.1	+0.1
carbon source	L-Valine (C)	N.D.	+0.3	-1.5	+2.0	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+0.2	+1.0	+1.9	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.3	+1.9	+1.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.9	+2.7	-0.4	+0.5