Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_16695 and PS417_16700 overlap by 4 nucleotidesPS417_16700 and PS417_16705 are separated by 59 nucleotidesPS417_16705 and PS417_16710 are separated by 26 nucleotidesPS417_16710 and PS417_16715 are separated by 18 nucleotides PS417_16695: PS417_16695 - hypothetical protein, at 3,644,751 to 3,645,500 _16695 PS417_16700: PS417_16700 - hypothetical protein, at 3,645,497 to 3,646,321 _16700 PS417_16705: PS417_16705 - hypothetical protein, at 3,646,381 to 3,646,653 _16705 PS417_16710: PS417_16710 - hydrolase, at 3,646,680 to 3,647,441 _16710 PS417_16715: PS417_16715 - DoxX family protein, at 3,647,460 to 3,647,867 _16715
Group Condition PS417_16695 PS417_16700 PS417_16705 PS417_16710 PS417_16715
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -0.4 N.D. -0.0 -3.2
phage JP1 MOI 10 -0.4 +0.5 N.D. -0.1 -2.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.0 N.D. -0.2 -1.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.4 -0.1 N.D. -0.5 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 +0.3 N.D. -0.1 -2.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x -0.1 -0.1 N.D. -0.4 -1.8
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 +0.0 N.D. -0.9 -1.0
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.3 -0.0 N.D. -0.3 -2.2
carbon source 2'-Deoxyinosine 5 mM (C) +0.3 -0.1 N.D. -0.5 -1.6
supernatant control Vogels_fungal_media 0.1X +0.3 +0.1 N.D. +0.0 -2.3
stress methylglyoxal 0.032 vol% +0.6 -0.3 N.D. -0.4 -1.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.6 +0.1 N.D. +0.4 -1.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 +0.4 N.D. -0.1 -1.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -0.4 N.D. -0.3 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 -0.3 N.D. -0.1 -1.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -0.5 N.D. +0.1 -1.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 -0.3 N.D. -0.1 -1.5
stress 1-ethyl-3-methylimidazolium chloride 200 mM -0.3 +0.6 N.D. -0.2 -1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +0.2 N.D. -0.5 -1.4
carbon source L-Valine (C) +0.4 -0.2 N.D. +0.3 -1.5
carbon source Carbon source L-Citrulline 5 mM +0.4 +0.5 N.D. -0.3 -1.6
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.4 +0.6 N.D. +0.1 -1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.8 +0.3 N.D. -0.6 -1.2
phage P. simiae ORA MOI 0.1 +0.6 -0.1 N.D. +0.6 -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 +0.9 N.D. -0.4 +0.3
agar plate interaction control Taped volatile agar plate with no fungus -0.2 +0.3 N.D. -0.8 +1.7
phage P. simiae ORA MOI 1 +0.7 +0.4 N.D. -0.6 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 +0.0 N.D. +0.3 +1.9
phage P. simiae OR Antrim MOI 10 +0.8 +0.4 N.D. -0.5 +1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 +0.1 N.D. +0.9 +2.7
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PS417_16695
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PS417_16700
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