Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16650	PS417_16655	PS417_16660	PS417_16665	PS417_16675
phage	JP1 MOI 10	+0.1	-0.1	N.D.	-1.6	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.1	N.D.	-1.4	-0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.3	-0.1	N.D.	-1.6	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.3	N.D.	-0.7	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.5	-0.4	N.D.	-0.4	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.3	N.D.	-0.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.1	N.D.	-0.9	-0.1
phage	P. simiae ORA MOI 0.1	+0.0	+0.4	N.D.	-2.0	+0.2
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.3	-0.5	N.D.	-0.7	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.4	N.D.	-0.7	-0.2
soil	soil sample 5; outgrowth in LB	-0.2	+0.2	N.D.	-1.3	+0.1
soil	soil sample 2; outgrowth in LB	+0.1	+0.1	N.D.	-1.3	-0.1
no phage control	no phage control	-0.3	+0.2	N.D.	-0.9	-0.2
phage	JP1 MOI 1	+0.2	-0.2	N.D.	-1.0	-0.1
soil	soil sample 4; outgrowth in LB	-0.3	+0.3	N.D.	-0.8	-0.2
phage	P. simiae OR Antrim MOI 1	-0.0	+0.1	N.D.	-1.3	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5	-0.1	N.D.	-1.1	+0.0
stress	methylglyoxal 0.032 vol%	-0.1	+0.7	N.D.	-0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.0	N.D.	+0.4	-0.7
phage	P. simiae OR Antrim MOI 1	+0.5	-0.3	N.D.	-0.5	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.4	N.D.	-0.6	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.4	-0.3	N.D.	+0.6	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.4	N.D.	-0.9	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	-0.4	N.D.	+0.7	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.2	N.D.	-0.3	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.2	N.D.	+1.1	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.0	+0.4	N.D.	+0.9	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.1	N.D.	+0.8	+0.3
stress	Gentamicin 0.008 mg/ml	+0.2	+0.2	N.D.	+1.0	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	+0.2	N.D.	+1.3	-0.1