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Fitness for 5 genes in
Pseudomonas simiae WCS417
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500 nt
PS417_01640 and PS417_01645 are separated by 287 nucleotides
PS417_01645 and PS417_01650 are separated by 77 nucleotides
PS417_01650 and PS417_01655 are separated by 150 nucleotides
PS417_01655 and PS417_01660 are separated by 334 nucleotides
PS417_01640: PS417_01640 - histidine kinase, at 359,602 to 360,687
_01640
PS417_01645: PS417_01645 - cupin, at 360,975 to 361,400
_01645
PS417_01650: PS417_01650 - chorismate mutase, at 361,478 to 362,014
_01650
PS417_01655: PS417_01655 - glutamine synthetase, at 362,165 to 363,571
_01655
PS417_01660: PS417_01660 - tRNA s(4)U8 sulfurtransferase, at 363,906 to 365,360
_01660
Group
Condition
PS417
_01640
PS417
_01645
PS417
_01650
PS417
_01655
PS417
_01660
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.5
-0.5
+0.1
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.2
-0.0
-0.3
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.5
+0.0
+0.0
N.D.
N.D.
nitrogen source
Uridine (N)
-6.5
-0.2
+0.3
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.8
+0.3
-0.5
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.2
+0.5
-0.2
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.9
+0.1
-0.1
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.6
+0.6
+0.1
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-4.5
-1.5
+0.2
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.4
+0.5
+0.2
N.D.
N.D.
nitrogen source
Inosine (N)
-5.7
-0.0
+0.0
N.D.
N.D.
nitrogen source
Cytosine (N)
-6.3
+0.3
+0.2
N.D.
N.D.
nitrogen source
nitrate (N)
-5.4
-0.3
+0.2
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.0
-0.7
+0.3
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.5
+0.1
+0.0
N.D.
N.D.
nitrogen source
Urea (N)
-5.5
+0.1
+0.1
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.4
+1.2
-0.1
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.7
+0.3
+0.4
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-4.5
-0.5
-0.1
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.9
+0.8
+0.3
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-6.3
+1.2
+0.3
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-4.5
-0.1
-0.2
N.D.
N.D.
nitrogen source
Cytidine (N)
-4.7
-0.2
+0.1
N.D.
N.D.
nitrogen source
Glycine (N)
-4.9
-0.1
+0.2
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-4.6
-0.3
+0.3
N.D.
N.D.
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-3.1
-1.1
+0.0
N.D.
N.D.
seeds
Growth on radish seeds for 72 hours
-1.5
-1.9
-0.1
N.D.
N.D.
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
-2.9
-0.5
+0.0
N.D.
N.D.
seeds
Growth on radish seeds for 72 hours
-2.6
-0.5
+0.0
N.D.
N.D.
nitrogen source
Putrescine (N)
-3.2
+0.1
+0.3
N.D.
N.D.
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