Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16515	PS417_16520	PS417_16525	PS417_16530	PS417_16535
root	root sample 6; outgrowth in LB	-1.9	-2.9	-0.3	N.D.	+0.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	-1.7	-1.5	-0.4	N.D.	-0.9
stress	Gentamicin 0.008 mg/ml	-2.3	-0.7	+0.2	N.D.	-1.1
soil	soil sample 2; outgrowth in LB	-1.5	-1.8	-0.4	N.D.	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.4	-1.3	+0.1	N.D.	-0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-0.5	-0.4	N.D.	-1.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.4	-1.7	+0.0	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-2.0	-0.4	N.D.	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	-1.1	-0.1	N.D.	-0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.1	-1.2	-0.2	N.D.	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.9	-0.2	N.D.	-1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	-0.8	-0.3	N.D.	-1.1
carbon source	Uridine (C)	-0.8	-1.1	-0.2	N.D.	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.6	-1.0	-0.4	N.D.	-0.5
carbon source	L-Valine (C)	+0.7	-1.0	-0.1	N.D.	-2.1
carbon source	2'-Deoxyinosine 5 mM (C)	-1.8	+0.1	-0.3	N.D.	-0.5
stress	Neomycin 0.04 mg/ml	-2.1	+0.1	+0.0	N.D.	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.2	-1.3	+0.1	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-2.4	-0.1	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.2	+0.0	-0.0	N.D.	+0.3
carbon source	D-Glucosamine Hydrochloride (C)	-1.2	-0.8	+0.0	N.D.	+0.6
stress	Polymyxin B sulfate 0.006 mg/ml	-2.7	+0.6	+0.0	N.D.	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.4	-1.2	+0.0	N.D.	+0.2
supernatant control	Vogels_fungal_media 0.1X	-0.9	+1.5	-0.2	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	-0.8	-0.2	N.D.	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.8	+0.4	N.D.	+1.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.0	+1.4	-0.0	N.D.	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+1.1	+0.4	N.D.	+0.9
stress	methylglyoxal 0.032 vol%	+2.6	-0.7	+0.1	N.D.	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.4	+0.9	+0.0	N.D.	-0.4