Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_16395	PS417_16400	PS417_16405	PS417_16410	PS417_16415
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-6.5	-0.3	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-2.0	-0.0	N.D.	-1.0
carbon source	2'-Deoxyinosine 5 mM (C)	-1.1	-0.7	-0.4	N.D.	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-1.3	+0.1	N.D.	-0.5
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.4	-1.4	-0.2	N.D.	+0.2
phage	P. simiae OR Antrim MOI 0.1	-0.2	-1.3	-0.4	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.2	-0.3	N.D.	-1.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.6	-1.0	-0.1	N.D.	+0.2
seeds	Growth on radish seeds for 72 hours	+1.0	-0.9	-0.6	N.D.	-0.7
no phage control	no phage control	-0.2	-1.4	+0.1	N.D.	+0.4
phage	Wcs_1	+1.0	-2.2	-0.2	N.D.	+0.3
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.5	-0.9	-0.2	N.D.	-0.3
stress	Cisplatin 0.01 mg/ml	-0.4	+0.7	+0.4	N.D.	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+1.3	+0.0	N.D.	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+0.8	+0.1	N.D.	-0.9
phage	JP1 MOI 10	-1.4	+0.5	-0.0	N.D.	+0.5
phage	P. simiae OR1 MOI 0.1	-0.5	-1.0	+0.3	N.D.	+0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	+0.9	-0.2	N.D.	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.4	-0.6	N.D.	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.5	+0.7	-0.4	N.D.	-0.5
phage	JP1 MOI 10	+1.2	-0.2	+0.0	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+1.0	+0.4	N.D.	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.3	+1.0	+0.2	N.D.	-0.7
phage	P. simiae Grant Run MOI 10	-0.5	+1.1	+0.0	N.D.	+0.3
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.2	+1.5	+0.1	N.D.	-0.3
carbon source	L-Valine (C)	+1.5	-0.1	-0.0	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.4	+0.3	N.D.	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.0	+0.5	+0.1	N.D.	+0.4
seeds	Growth on radish seeds for 72 hours	-0.0	+1.5	-0.0	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.5	-0.3	-0.1	N.D.	+1.9