Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_16380 and PS417_16385 overlap by 4 nucleotidesPS417_16385 and PS417_16390 are separated by 139 nucleotidesPS417_16390 and PS417_16395 are separated by 115 nucleotidesPS417_16395 and PS417_16400 overlap by 4 nucleotides PS417_16380: PS417_16380 - hypothetical protein, at 3,585,259 to 3,585,699 _16380 PS417_16385: PS417_16385 - hypothetical protein, at 3,585,696 to 3,586,100 _16385 PS417_16390: PS417_16390 - peroxiredoxin, at 3,586,240 to 3,586,701 _16390 PS417_16395: PS417_16395 - arsenate reductase, at 3,586,817 to 3,587,170 _16395 PS417_16400: PS417_16400 - NAD(P)H-quinone oxidoreductase, at 3,587,167 to 3,587,781 _16400
Group Condition PS417_16380 PS417_16385 PS417_16390 PS417_16395 PS417_16400
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.2 -0.4 +0.0 -6.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 -0.1 -0.4 -2.0
phage P. simiae OR1 MOI 0.1 N.D. -0.0 -0.5 -0.5 -1.0
solid stress Fraxetin 3 mM; solid stress N.D. -0.3 -1.0 +0.0 -0.6
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. +0.2 -0.2 -0.4 -1.4
carbon source 2'-Deoxyinosine 5 mM (C) N.D. +0.1 +0.0 -1.1 -0.7
phage JP1 MOI 10 N.D. -0.4 -0.3 -1.4 +0.5
phage Wcs_1 N.D. +0.2 -0.1 +1.0 -2.2
phage P. simiae OR Antrim MOI 0.1 N.D. -0.3 +0.6 -0.2 -1.3
motility inner cut, LB soft agar motility assay N.D. -0.7 +0.7 -0.7 -0.4
phage Wcs_0.1 N.D. +0.6 -0.2 -1.0 -0.4
solid stress Fraxetin 3 mM; solid stress N.D. -0.2 -1.3 +0.5 +0.4
seeds Growth on radish seeds for 72 hours N.D. -0.1 -0.5 +1.0 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.5 -0.4 +0.5 -1.0
stress 1-ethyl-3-methylimidazolium chloride 200 mM N.D. -0.2 +0.6 +0.2 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 +0.4 +0.4 -1.0
stress Neomycin 0.04 mg/ml N.D. +1.1 -0.9 +0.6 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.6 -0.1 -0.8 +0.8
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. -0.0 -0.6 -0.2 +1.5
phage P. simiae Grant Run MOI 10 N.D. -0.2 +0.4 -0.5 +1.1
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. +0.4 +0.3 -0.6 +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.1 -0.3 +1.5 -0.3
stress Gentamicin 0.008 mg/ml N.D. +0.2 +2.3 -0.0 -1.0
phage P. simiae ORA MOI 10 N.D. +0.2 -0.3 +0.6 +1.0
carbon source L-Valine (C) N.D. -0.0 +0.3 +1.5 -0.1
stress Paraquat dichloride 0.008 mg/ml N.D. +0.1 +2.3 -0.1 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.6 +0.1 +0.8 +0.6
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +0.8 +0.1 +0.6 +0.6
seeds Growth on radish seeds for 72 hours N.D. +0.3 +0.4 -0.0 +1.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.5 +0.6 +1.0 +0.5
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PS417_16380
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PS417_16385
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PS417_16395
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PS417_16400
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