Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_16370	PS417_16375	PS417_16380	PS417_16385	PS417_16390
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-6.1	-0.8	N.D.	+0.2	+0.0
solid stress	Fraxetin 3 mM; solid stress	-5.3	+0.3	N.D.	-0.2	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.2	-0.1	N.D.	+0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.9	+0.1	N.D.	+0.0	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.9	+0.1	N.D.	+0.0	+0.3
carbon source	2'-Deoxyinosine 5 mM (C)	+4.0	-0.5	N.D.	+0.1	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+3.5	+0.4	N.D.	-0.3	+0.1
nitrogen source	Cytidine (N)	+4.0	+0.1	N.D.	-0.1	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+4.3	-0.2	N.D.	+0.1	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+4.8	-0.2	N.D.	+0.2	-0.2
soil	soil sample 2; outgrowth in LB	+5.4	-0.7	N.D.	+0.2	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+4.5	+0.7	N.D.	-0.1	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+4.3	+0.1	N.D.	+0.9	+0.1
soil	soil sample 7; outgrowth in LB	+6.4	-0.9	N.D.	+0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+6.1	-0.3	N.D.	+0.1	+0.1
soil	soil sample 8; outgrowth in LB	+6.2	-0.3	N.D.	-0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+6.5	-0.3	N.D.	-0.0	-0.1
soil	soil sample 5; outgrowth in LB	+7.1	-1.1	N.D.	-0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+6.6	-0.3	N.D.	+0.0	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+6.5	-0.1	N.D.	+0.1	+0.0
rhizosphere	rhizosphere sample 1; outgrowth in LB	+8.1	-0.9	N.D.	-0.5	-0.1
stress	Gentamicin 0.008 mg/ml	+4.1	+0.1	N.D.	+0.2	+2.3
soil	soil sample 6; outgrowth in LB	+7.7	-0.5	N.D.	-0.2	-0.2
soil	soil sample 4; outgrowth in LB	+7.5	-0.6	N.D.	+0.0	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+7.4	-0.4	N.D.	+0.1	+0.1
soil	soil sample 3; outgrowth in LB	+7.4	-0.6	N.D.	+0.4	+0.3
rhizosphere	rhizosphere sample 8; outgrowth in LB	+7.8	-0.7	N.D.	+0.2	+0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	+8.8	-1.0	N.D.	-0.0	-0.0
root	root sample 6; outgrowth in LB	+9.0	-0.9	N.D.	-0.1	+0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+8.7	+0.1	N.D.	+0.1	-0.2