Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_16360 and PS417_16365 overlap by 14 nucleotidesPS417_16365 and PS417_16370 are separated by 206 nucleotidesPS417_16370 and PS417_16375 are separated by 122 nucleotidesPS417_16375 and PS417_16380 are separated by 70 nucleotides PS417_16360: PS417_16360 - histidine kinase, at 3,579,031 to 3,580,401 _16360 PS417_16365: PS417_16365 - transcriptional regulator, at 3,580,388 to 3,581,116 _16365 PS417_16370: PS417_16370 - chemotaxis protein CheY, at 3,581,323 to 3,584,076 _16370 PS417_16375: PS417_16375 - 2-hydroxyacid dehydrogenase, at 3,584,199 to 3,585,188 _16375 PS417_16380: PS417_16380 - hypothetical protein, at 3,585,259 to 3,585,699 _16380
Group Condition PS417_16360 PS417_16365 PS417_16370 PS417_16375 PS417_16380
solid stress Fraxetin 3 mM; solid stress -1.4 N.D. -5.3 +0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 N.D. -6.1 -0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 N.D. -4.2 -0.1 N.D.
liquid stress Fraxetin 3 mM; liquid stress -2.2 N.D. -2.1 +0.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 N.D. -3.9 +0.1 N.D.
solid stress Fraxetin 3 mM; solid stress -1.2 N.D. -3.0 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.1 N.D. +3.6 -0.2 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.6 N.D. +4.0 -0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.0 N.D. +4.3 +0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 N.D. +4.8 -0.2 N.D.
stress Gentamicin 0.008 mg/ml +0.5 N.D. +4.1 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +1.1 N.D. +4.3 -0.2 N.D.
soil soil sample 7; outgrowth in LB -0.2 N.D. +6.4 -0.9 N.D.
soil soil sample 2; outgrowth in LB +0.5 N.D. +5.4 -0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 N.D. +4.5 +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 N.D. +6.1 -0.3 N.D.
soil soil sample 8; outgrowth in LB +0.3 N.D. +6.2 -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 N.D. +6.5 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 N.D. +6.5 -0.3 N.D.
soil soil sample 5; outgrowth in LB +0.3 N.D. +7.1 -1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 N.D. +6.6 -0.3 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -0.3 N.D. +8.1 -0.9 N.D.
soil soil sample 3; outgrowth in LB +0.1 N.D. +7.4 -0.6 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB +0.1 N.D. +7.8 -0.7 N.D.
soil soil sample 4; outgrowth in LB +0.3 N.D. +7.5 -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 N.D. +7.4 -0.4 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB -0.4 N.D. +8.8 -1.0 N.D.
soil soil sample 6; outgrowth in LB +0.3 N.D. +7.7 -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.1 N.D. +8.7 +0.1 N.D.
root root sample 6; outgrowth in LB +0.7 N.D. +9.0 -0.9 N.D.
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